Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A17_RS18395 Genome accession   NZ_CP076264
Coordinates   3715622..3716089 (+) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain NADC1036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3710622..3721089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A17_RS18350 (A7A17_18305) rplP 3710732..3711142 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A17_RS18355 (A7A17_18310) rpsC 3711155..3711856 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A17_RS18360 (A7A17_18315) rplV 3711874..3712206 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A17_RS18365 (A7A17_18320) rpsS 3712221..3712499 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A17_RS18370 (A7A17_18325) rplB 3712516..3713337 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A17_RS18375 (A7A17_18330) rplW 3713355..3713657 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A17_RS18380 (A7A17_18335) rplD 3713654..3714259 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A17_RS18385 (A7A17_18340) rplC 3714270..3714899 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A17_RS18390 (A7A17_18345) rpsJ 3714932..3715243 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A17_RS18395 (A7A17_18350) pilD 3715622..3716089 (+) 468 WP_000340167.1 A24 family peptidase Machinery gene
  A7A17_RS18400 (A7A17_18355) bfr 3716086..3716562 (-) 477 WP_000675515.1 bacterioferritin -
  A7A17_RS18405 (A7A17_18360) bfd 3716635..3716829 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A17_RS18410 (A7A17_18365) tuf 3717012..3718196 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A17_RS18415 (A7A17_18370) fusA 3718267..3720381 (-) 2115 WP_000124700.1 elongation factor G -
  A7A17_RS18420 (A7A17_18375) rpsG 3720478..3720948 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=501285 A7A17_RS18395 WP_000340167.1 3715622..3716089(+) (pilD) [Escherichia coli strain NADC1036]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501285 A7A17_RS18395 WP_000340167.1 3715622..3716089(+) (pilD) [Escherichia coli strain NADC1036]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361