Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A7A18_RS18360 Genome accession   NZ_CP076262
Coordinates   3725263..3725730 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3720263..3730730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A18_RS18315 (A7A18_18275) rplP 3720373..3720783 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A7A18_RS18320 (A7A18_18280) rpsC 3720796..3721497 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A7A18_RS18325 (A7A18_18285) rplV 3721515..3721847 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A7A18_RS18330 (A7A18_18290) rpsS 3721862..3722140 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A7A18_RS18335 (A7A18_18295) rplB 3722157..3722978 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A7A18_RS18340 (A7A18_18300) rplW 3722996..3723298 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A7A18_RS18345 (A7A18_18305) rplD 3723295..3723900 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A7A18_RS18350 (A7A18_18310) rplC 3723911..3724540 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A7A18_RS18355 (A7A18_18315) rpsJ 3724573..3724884 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A7A18_RS18360 (A7A18_18320) pilD 3725263..3725730 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  A7A18_RS18365 (A7A18_18325) bfr 3725727..3726203 (-) 477 WP_000675515.1 bacterioferritin -
  A7A18_RS18370 (A7A18_18330) bfd 3726276..3726470 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A7A18_RS18375 (A7A18_18335) tuf 3726653..3727837 (-) 1185 WP_000031783.1 elongation factor Tu -
  A7A18_RS18380 (A7A18_18340) fusA 3727908..3730022 (-) 2115 WP_000124700.1 elongation factor G -
  A7A18_RS18385 (A7A18_18345) rpsG 3730119..3730589 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=501206 A7A18_RS18360 WP_000339836.1 3725263..3725730(+) (pilD) [Escherichia coli strain 0-4]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=501206 A7A18_RS18360 WP_000339836.1 3725263..3725730(+) (pilD) [Escherichia coli strain 0-4]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361