Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JKN68_RS02515 Genome accession   NZ_CP076235
Coordinates   530316..530783 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli O157:H7 strain 9.1_Anguil     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525316..535783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKN68_RS02490 (JKN68_02485) rpsG 525457..525927 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JKN68_RS02495 (JKN68_02490) fusA 526024..528138 (+) 2115 WP_000124700.1 elongation factor G -
  JKN68_RS02500 (JKN68_02495) tuf 528209..529393 (+) 1185 WP_000031783.1 elongation factor Tu -
  JKN68_RS02505 (JKN68_02500) bfd 529576..529770 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JKN68_RS02510 (JKN68_02505) bfr 529843..530319 (+) 477 WP_000675516.1 bacterioferritin -
  JKN68_RS02515 (JKN68_02510) pilD 530316..530783 (-) 468 WP_000381746.1 prepilin peptidase Machinery gene
  JKN68_RS02520 (JKN68_02515) rpsJ 531162..531473 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JKN68_RS02525 (JKN68_02520) rplC 531506..532135 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JKN68_RS02530 (JKN68_02525) rplD 532146..532751 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JKN68_RS02535 (JKN68_02530) rplW 532748..533050 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JKN68_RS02540 (JKN68_02535) rplB 533068..533889 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JKN68_RS02545 (JKN68_02540) rpsS 533906..534184 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JKN68_RS02550 (JKN68_02545) rplV 534199..534531 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JKN68_RS02555 (JKN68_02550) rpsC 534549..535250 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JKN68_RS02560 (JKN68_02555) rplP 535263..535673 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=500699 JKN68_RS02515 WP_000381746.1 530316..530783(-) (pilD) [Escherichia coli O157:H7 strain 9.1_Anguil]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=500699 JKN68_RS02515 WP_000381746.1 530316..530783(-) (pilD) [Escherichia coli O157:H7 strain 9.1_Anguil]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387