Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IQ966_RS06270 Genome accession   NZ_CP064275
Coordinates   1147134..1149491 (-) Length   785 a.a.
NCBI ID   WP_243549999.1    Uniprot ID   A0AAX6NAU3
Organism   Priestia megaterium strain B1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142134..1154491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ966_RS06250 alaS 1142443..1145076 (-) 2634 WP_226554884.1 alanine--tRNA ligase -
  IQ966_RS06255 - 1145465..1146526 (-) 1062 WP_226554883.1 AI-2E family transporter -
  IQ966_RS06260 - 1146641..1146775 (-) 135 WP_013059291.1 YrzQ family protein -
  IQ966_RS06265 - 1146801..1146992 (-) 192 WP_013059292.1 hypothetical protein -
  IQ966_RS06270 recD2 1147134..1149491 (-) 2358 WP_243549999.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IQ966_RS06275 - 1149516..1150175 (-) 660 WP_013085089.1 tetratricopeptide repeat protein -
  IQ966_RS06280 mnmA 1150333..1151445 (-) 1113 WP_014458148.1 tRNA 2-thiouridine(34) synthase MnmA -
  IQ966_RS06285 - 1151552..1152694 (-) 1143 WP_243550001.1 cysteine desulfurase family protein -
  IQ966_RS06290 - 1152718..1153134 (-) 417 WP_013059297.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88819.21 Da        Isoelectric Point: 5.0229

>NTDB_id=500497 IQ966_RS06270 WP_243549999.1 1147134..1149491(-) (recD2) [Priestia megaterium strain B1]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEIYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQTIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=500497 IQ966_RS06270 WP_243549999.1 1147134..1149491(-) (recD2) [Priestia megaterium strain B1]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTTGTTA
CGGGCTATTTTCCTAAGTTGAATGAAGATGAAATATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGCCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGCGATTTATT
TCACGGCATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTACAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACTCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACGGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAACCCTTATCAGCTTGTAGAAGATATTCAAGGGATTGGTTTTAGCCGGGCCGATG
AACTTGGAAAGAGACTTGGTATGGCAACGAATCATCCTGATCGTTTGCGTGCGGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATTATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTTTATGCTGAAAAAGGACTGGTTAAAGCTATTCAAACAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAGCTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACAG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCATGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTCGCACCTACTGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCGGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGCCTGACGGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACAAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGACATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAAGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACCCATGCATACTGCTGTTCCATCCATAAATCACAGGGAAGTGAATTTC
CTATTGTTGTACTTCCGATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTGCTTTATACAGCCGTTACGCGAAGC
AAACAATTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTTAGCCGAAATGAAGACAGCGTCCGACAAAC
GAACCTACAGCCCTTGCTTCGAGAAAGCTTAGATAACGATATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637