Detailed information NTG0500397

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: KMZ31_RS12670
• Genome accession: NZ_CP076117
• Coordinates: 2601458..2602726 (+)
• Length: 422 a.a.
• NCBI ID: WP_029326053.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain CQN-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2596458..2607726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KMZ31_RS12650 (KMZ31_12535)	-	2597829..2598479 (-)	651	WP_032873859.1	tetratricopeptide repeat protein	-
KMZ31_RS12655 (KMZ31_12540)	mnmA	2598537..2599652 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
KMZ31_RS12660 (KMZ31_12545)	-	2599689..2600828 (-)	1140	WP_032873857.1	cysteine desulfurase family protein	-
KMZ31_RS12665 (KMZ31_12550)	cymR	2600847..2601263 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
KMZ31_RS12670 (KMZ31_12555)	rarA	2601458..2602726 (+)	1269	WP_029326053.1	replication-associated recombination protein A	Machinery gene
KMZ31_RS12675 (KMZ31_12560)	-	2602841..2603605 (-)	765	WP_032873855.1	tRNA threonylcarbamoyladenosine dehydratase	-
KMZ31_RS12685 (KMZ31_12570)	aspS	2603931..2605709 (-)	1779	WP_032873853.1	aspartate--tRNA ligase	-
KMZ31_RS12690 (KMZ31_12575)	hisS	2605724..2606998 (-)	1275	WP_032873851.1	histidine--tRNA ligase	-
KMZ31_RS12695 (KMZ31_12580)	-	2607355..2607525 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46646.54 Da
• Isoelectric Point: 8.5446

>NTDB_id=500397 KMZ31_RS12670 WP_029326053.1 2601458..2602726(+) (rarA) [Bacillus amyloliquefaciens strain CQN-2]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTVRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=500397 KMZ31_RS12670 WP_029326053.1 2601458..2602726(+) (rarA) [Bacillus amyloliquefaciens strain CQN-2]
ATGAAACCACTGGCGTATCGGATGCGGCCTGCCAATATTGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACATCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCTTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGGGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGG
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGAACGGGTAA
AATCGGCGATGTGCCGAAACATCTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905