Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JFY28_RS15435 Genome accession   NZ_CP075852
Coordinates   3189506..3189973 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain S19-651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3184506..3194973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY28_RS15410 (JFY28_015410) rpsG 3184647..3185117 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JFY28_RS15415 (JFY28_015415) fusA 3185214..3187328 (+) 2115 WP_000124700.1 elongation factor G -
  JFY28_RS15420 (JFY28_015420) tuf 3187399..3188583 (+) 1185 WP_000031783.1 elongation factor Tu -
  JFY28_RS15425 (JFY28_015425) bfd 3188766..3188960 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JFY28_RS15430 (JFY28_015430) bfr 3189033..3189509 (+) 477 WP_000675515.1 bacterioferritin -
  JFY28_RS15435 (JFY28_015435) pilD 3189506..3189973 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  JFY28_RS15440 (JFY28_015440) rpsJ 3190352..3190663 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JFY28_RS15445 (JFY28_015445) rplC 3190696..3191325 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JFY28_RS15450 (JFY28_015450) rplD 3191336..3191941 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JFY28_RS15455 (JFY28_015455) rplW 3191938..3192240 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JFY28_RS15460 (JFY28_015460) rplB 3192258..3193079 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JFY28_RS15465 (JFY28_015465) rpsS 3193096..3193374 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JFY28_RS15470 (JFY28_015470) rplV 3193389..3193721 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JFY28_RS15475 (JFY28_015475) rpsC 3193739..3194440 (+) 702 WP_198798542.1 30S ribosomal protein S3 -
  JFY28_RS15480 (JFY28_015480) rplP 3194453..3194863 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=500172 JFY28_RS15435 WP_000339836.1 3189506..3189973(-) (pilD) [Escherichia coli strain S19-651]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=500172 JFY28_RS15435 WP_000339836.1 3189506..3189973(-) (pilD) [Escherichia coli strain S19-651]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361