Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IS519_RS09710 Genome accession   NZ_CP064170
Coordinates   2178901..2179614 (+) Length   237 a.a.
NCBI ID   WP_349237796.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2173901..2184614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS09695 (IS519_09690) - 2174784..2177114 (+) 2331 WP_248638654.1 Tex family protein -
  IS519_RS09700 (IS519_09695) - 2177383..2177856 (-) 474 WP_048618565.1 hypothetical protein -
  IS519_RS09705 (IS519_09700) bioH 2178031..2178807 (-) 777 WP_048663065.1 pimeloyl-ACP methyl ester esterase BioH -
  IS519_RS09710 (IS519_09705) comF 2178901..2179614 (+) 714 WP_349237796.1 ComF family protein Machinery gene
  IS519_RS09715 (IS519_09710) nfuA 2179724..2180308 (+) 585 WP_029405734.1 Fe-S biogenesis protein NfuA -
  IS519_RS09720 (IS519_09715) nudE 2180607..2181158 (+) 552 WP_061033119.1 ADP compounds hydrolase NudE -
  IS519_RS09725 (IS519_09720) cysQ 2181194..2182021 (+) 828 WP_048663063.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IS519_RS09730 (IS519_09725) - 2182124..2182903 (-) 780 WP_248638656.1 type II secretion system protein N -
  IS519_RS09735 (IS519_09730) - 2182905..2183393 (-) 489 WP_048607632.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27114.46 Da        Isoelectric Point: 9.0211

>NTDB_id=499932 IS519_RS09710 WP_349237796.1 2178901..2179614(+) (comF) [Vibrio crassostreae strain ED395]
MLSDWLQKHTPRLVTPQCHLCKLDKLPSDTHPRWCNSCLKLFEPVPRCQRCGLKTLTTVEQCGECLAKPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIEHPALLITSVPLHWRRYTHRGFNQSQLLANYTAQELGVESDVLFRRIR
STASQQGLTKSARLHNLKSAFALRKQDFQGTIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=499932 IS519_RS09710 WP_349237796.1 2178901..2179614(+) (comF) [Vibrio crassostreae strain ED395]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAACTCGATAAACTCCC
CAGTGATACACATCCTAGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTGCCACGCTGTCAGCGATGTGGCTTAA
AAACACTGACCACCGTCGAGCAGTGTGGCGAGTGCTTAGCAAAACCACCACCGTGGCATCGCCTCTACTGCGTCGGCGAC
TACACCTTCCCTACAGCGGGTTATATTCAGCAAATGAAGTACGCTGATAAGTTTTGGTTTGCACGTGATCTGTCAAAGCT
ATTAGCATCACGTATCGAACATCCTGCTCTCCTGATCACCAGCGTGCCGCTGCATTGGCGTCGATATACTCATCGCGGCT
TTAATCAAAGTCAGCTGCTAGCCAACTACACGGCTCAAGAGCTTGGCGTTGAAAGTGATGTGCTATTTCGTCGAATTCGC
TCAACTGCTTCCCAGCAGGGGCTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTGCGCTGCGAAAACAAGA
CTTTCAAGGAACTATCCCCTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

50.612

100

0.523