Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KKZ15_RS17175 Genome accession   NZ_CP075716
Coordinates   3532032..3532499 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain CPww7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527032..3537499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ15_RS17150 (KKZ15_17075) rpsG 3527173..3527643 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KKZ15_RS17155 (KKZ15_17080) fusA 3527740..3529854 (+) 2115 WP_000124700.1 elongation factor G -
  KKZ15_RS17160 (KKZ15_17085) tuf 3529925..3531109 (+) 1185 WP_000031783.1 elongation factor Tu -
  KKZ15_RS17165 (KKZ15_17090) bfd 3531292..3531486 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KKZ15_RS17170 (KKZ15_17095) bfr 3531559..3532035 (+) 477 WP_000675515.1 bacterioferritin -
  KKZ15_RS17175 (KKZ15_17100) pilD 3532032..3532499 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  KKZ15_RS17180 (KKZ15_17105) rpsJ 3532878..3533189 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KKZ15_RS17185 (KKZ15_17110) rplC 3533222..3533851 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KKZ15_RS17190 (KKZ15_17115) rplD 3533862..3534467 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KKZ15_RS17195 (KKZ15_17120) rplW 3534464..3534766 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KKZ15_RS17200 (KKZ15_17125) rplB 3534784..3535605 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KKZ15_RS17205 (KKZ15_17130) rpsS 3535622..3535900 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KKZ15_RS17210 (KKZ15_17135) rplV 3535915..3536247 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KKZ15_RS17215 (KKZ15_17140) rpsC 3536265..3536966 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KKZ15_RS17220 (KKZ15_17145) rplP 3536979..3537389 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=499858 KKZ15_RS17175 WP_000339836.1 3532032..3532499(-) (pilD) [Escherichia coli strain CPww7]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=499858 KKZ15_RS17175 WP_000339836.1 3532032..3532499(-) (pilD) [Escherichia coli strain CPww7]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361