Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KKZ08_RS22200 Genome accession   NZ_CP075691
Coordinates   4913488..4914216 (+) Length   242 a.a.
NCBI ID   WP_223776129.1    Uniprot ID   -
Organism   Streptomyces sp. 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4908488..4919216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ08_RS22175 - 4908517..4908894 (+) 378 WP_223776124.1 TadE family protein -
  KKZ08_RS22180 - 4908894..4909352 (+) 459 WP_223776125.1 TadE/TadG family type IV pilus assembly protein -
  KKZ08_RS22185 - 4909349..4909813 (+) 465 WP_223776126.1 pilus assembly protein TadG-related protein -
  KKZ08_RS22190 - 4909825..4910202 (-) 378 WP_223776127.1 hypothetical protein -
  KKZ08_RS22195 - 4910429..4913479 (+) 3051 WP_223776128.1 bacterial transcriptional activator domain-containing protein -
  KKZ08_RS22200 pilD 4913488..4914216 (+) 729 WP_223776129.1 A24 family peptidase Machinery gene
  KKZ08_RS22205 mqnC 4914288..4915502 (+) 1215 WP_223776130.1 cyclic dehypoxanthinyl futalosine synthase -
  KKZ08_RS22210 - 4915510..4916109 (+) 600 WP_223776131.1 hypothetical protein -
  KKZ08_RS22215 - 4916301..4916996 (+) 696 WP_223776132.1 demethylmenaquinone methyltransferase -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 24402.80 Da        Isoelectric Point: 8.6835

>NTDB_id=499688 KKZ08_RS22200 WP_223776129.1 4913488..4914216(+) (pilD) [Streptomyces sp. 135]
MDVSLVLLALGGALWGALTGALVPRAAYRLSVPPDDTWRGECPEGHPLGGWLGLARCGHGDRYGPRTALVTAATAAVCAA
LALTTGPRPELAAWLLLAPVGVLLTVVDFGVHRLPDVLTLPLAGAALALLGGAALLPGHGGSWTGALYGALALAGAYFVL
FLINPNGMGFGDVKLALALGAALGWYGWGVLLLGTFAGFLLASLYGIALVAARRAGRKTAIPFGPFLLGGAFAGVLLGAY
TA

Nucleotide


Download         Length: 729 bp        

>NTDB_id=499688 KKZ08_RS22200 WP_223776129.1 4913488..4914216(+) (pilD) [Streptomyces sp. 135]
GTGGACGTCTCGCTCGTGCTCCTCGCCCTCGGCGGCGCGCTCTGGGGCGCCCTCACCGGCGCCCTCGTGCCCCGCGCCGC
CTACCGCCTCTCCGTCCCGCCGGACGACACCTGGCGAGGCGAGTGTCCTGAGGGGCACCCCCTCGGCGGCTGGCTCGGGC
TCGCGCGGTGCGGGCACGGGGACCGTTACGGGCCCCGCACCGCCCTGGTCACCGCGGCCACCGCGGCCGTCTGCGCCGCC
CTCGCCCTCACCACCGGCCCCCGCCCCGAACTCGCCGCCTGGCTGCTGCTCGCTCCCGTCGGCGTCCTCCTGACCGTCGT
CGACTTCGGGGTGCACCGGCTGCCGGACGTCCTCACGCTGCCGCTCGCCGGGGCCGCGCTCGCGCTGCTCGGGGGCGCCG
CGCTGCTGCCCGGGCACGGCGGCTCGTGGACCGGGGCGCTGTACGGGGCGCTCGCGCTGGCCGGGGCGTACTTCGTGCTC
TTCCTGATCAACCCCAACGGCATGGGGTTCGGTGACGTGAAGCTCGCCCTCGCGCTCGGGGCGGCGCTCGGCTGGTACGG
CTGGGGCGTGCTGCTGCTCGGCACCTTCGCCGGGTTCCTGCTGGCCTCGCTGTACGGCATCGCGCTCGTCGCGGCCCGCC
GCGCGGGGCGCAAGACGGCGATCCCCTTCGGGCCCTTCCTGCTCGGCGGCGCCTTCGCGGGCGTGCTGCTCGGGGCGTAC
ACCGCCTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(96-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

32.836

100

0.364