Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JFY30_RS15910 Genome accession   NZ_CP075665
Coordinates   3157840..3158307 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain STEC2018-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3152840..3163307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY30_RS15865 (JFY30_15865) rplP 3152950..3153360 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JFY30_RS15870 (JFY30_15870) rpsC 3153373..3154074 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JFY30_RS15875 (JFY30_15875) rplV 3154092..3154424 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JFY30_RS15880 (JFY30_15880) rpsS 3154439..3154717 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JFY30_RS15885 (JFY30_15885) rplB 3154734..3155555 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JFY30_RS15890 (JFY30_15890) rplW 3155573..3155875 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JFY30_RS15895 (JFY30_15895) rplD 3155872..3156477 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JFY30_RS15900 (JFY30_15900) rplC 3156488..3157117 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JFY30_RS15905 (JFY30_15905) rpsJ 3157150..3157461 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JFY30_RS15910 (JFY30_15910) pilD 3157840..3158307 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  JFY30_RS15915 (JFY30_15915) bfr 3158304..3158780 (-) 477 WP_000675515.1 bacterioferritin -
  JFY30_RS15920 (JFY30_15920) bfd 3158853..3159047 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JFY30_RS15925 (JFY30_15925) tuf 3159230..3160414 (-) 1185 WP_000031783.1 elongation factor Tu -
  JFY30_RS15930 (JFY30_15930) fusA 3160485..3162599 (-) 2115 WP_000124700.1 elongation factor G -
  JFY30_RS15935 (JFY30_15935) rpsG 3162696..3163166 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=499593 JFY30_RS15910 WP_000339836.1 3157840..3158307(+) (pilD) [Escherichia coli strain STEC2018-553]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=499593 JFY30_RS15910 WP_000339836.1 3157840..3158307(+) (pilD) [Escherichia coli strain STEC2018-553]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361