Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K748_RS00685 Genome accession   NC_021882
Coordinates   137624..138799 (+) Length   391 a.a.
NCBI ID   WP_015645295.1    Uniprot ID   -
Organism   Helicobacter pylori UM298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 132624..143799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K748_RS00660 (K748_01910) - 132905..133801 (+) 897 WP_015645291.1 OriC activity response regulator -
  K748_RS00665 (K748_01915) - 134026..134892 (+) 867 WP_080288888.1 5'-3' exonuclease -
  K748_RS00670 (K748_01920) - 134962..136212 (-) 1251 WP_015645293.1 hypothetical protein -
  K748_RS00675 (K748_01925) - 136380..137246 (+) 867 WP_015645294.1 DnaJ C-terminal domain-containing protein -
  K748_RS00680 (K748_01930) - 137256..137627 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  K748_RS00685 (K748_01935) rarA 137624..138799 (+) 1176 WP_015645295.1 replication-associated recombination protein A Machinery gene
  K748_RS00690 (K748_01940) fur 138960..139412 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  K748_RS00695 (K748_01945) - 139431..139928 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  K748_RS00700 (K748_01950) - 139925..140461 (-) 537 WP_015645296.1 YhcH/YjgK/YiaL family protein -
  K748_RS00705 (K748_01955) fliY 140489..141352 (-) 864 WP_015645297.1 flagellar motor switch protein FliY -
  K748_RS00710 (K748_01960) fliM 141356..142420 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  K748_RS00715 (K748_01965) - 142413..143189 (-) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  K748_RS00720 (K748_01970) - 143167..143481 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43937.56 Da        Isoelectric Point: 8.4007

>NTDB_id=49953 K748_RS00685 WP_015645295.1 137624..138799(+) (rarA) [Helicobacter pylori UM298]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLTQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSTKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=49953 K748_RS00685 WP_015645295.1 137624..138799(+) (rarA) [Helicobacter pylori UM298]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGA
CTCAAATCATCGCCCGCATGCTAGAGCGTCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCACTAAGATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATTTAGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment