Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ28_RS10285 Genome accession   NZ_CP064096
Coordinates   1948435..1949214 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain N1142-3at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1943435..1954214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS10255 fliH 1943452..1944204 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  IRJ28_RS10260 fliG 1944197..1945213 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IRJ28_RS10265 fliF 1945226..1946837 (-) 1612 Protein_2021 flagellar basal-body MS-ring/collar protein FliF -
  IRJ28_RS10270 fliE 1946883..1947203 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IRJ28_RS10275 flgC 1947214..1947666 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  IRJ28_RS10280 flgB 1947666..1948055 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  IRJ28_RS10285 codY 1948435..1949214 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ28_RS10290 hslU 1949254..1950657 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  IRJ28_RS10295 clpQ 1950674..1951219 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  IRJ28_RS10300 xerC 1951232..1952146 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  IRJ28_RS10305 trmFO 1952214..1953521 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=499471 IRJ28_RS10285 WP_003220850.1 1948435..1949214(-) (codY) [Bacillus subtilis strain N1142-3at]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499471 IRJ28_RS10285 WP_003220850.1 1948435..1949214(-) (codY) [Bacillus subtilis strain N1142-3at]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467