Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ27_RS01115 Genome accession   NZ_CP064095
Coordinates   268489..269268 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain N1303-2Ay     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 263489..274268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS01085 fliH 263506..264258 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  IRJ27_RS01090 fliG 264251..265267 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IRJ27_RS01095 fliF 265280..266891 (-) 1612 Protein_220 flagellar basal-body MS-ring/collar protein FliF -
  IRJ27_RS01100 fliE 266937..267257 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IRJ27_RS01105 flgC 267268..267720 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  IRJ27_RS01110 flgB 267720..268109 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  IRJ27_RS01115 codY 268489..269268 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ27_RS01120 hslU 269308..270711 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  IRJ27_RS01125 clpQ 270728..271273 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  IRJ27_RS01130 xerC 271286..272200 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  IRJ27_RS01135 trmFO 272268..273575 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=499355 IRJ27_RS01115 WP_003220850.1 268489..269268(-) (codY) [Bacillus subtilis strain N1303-2Ay]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499355 IRJ27_RS01115 WP_003220850.1 268489..269268(-) (codY) [Bacillus subtilis strain N1303-2Ay]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467