Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ26_RS21050 Genome accession   NZ_CP064094
Coordinates   3995214..3995993 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain N1108-5at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3990214..4000993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS21020 fliH 3990231..3990983 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  IRJ26_RS21025 fliG 3990976..3991992 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IRJ26_RS21030 fliF 3992005..3993616 (-) 1612 Protein_4088 flagellar basal-body MS-ring/collar protein FliF -
  IRJ26_RS21035 fliE 3993662..3993982 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IRJ26_RS21040 flgC 3993993..3994445 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  IRJ26_RS21045 flgB 3994445..3994834 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  IRJ26_RS21050 codY 3995214..3995993 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ26_RS21055 hslU 3996033..3997436 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  IRJ26_RS21060 clpQ 3997453..3997998 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  IRJ26_RS21065 xerC 3998011..3998925 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  IRJ26_RS21070 trmFO 3998993..4000300 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=499348 IRJ26_RS21050 WP_003220850.1 3995214..3995993(-) (codY) [Bacillus subtilis strain N1108-5at]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499348 IRJ26_RS21050 WP_003220850.1 3995214..3995993(-) (codY) [Bacillus subtilis strain N1108-5at]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467