Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ24_RS18750 Genome accession   NZ_CP064093
Coordinates   3578942..3579721 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain N1282-4at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573942..3584721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS18720 fliH 3573959..3574711 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  IRJ24_RS18725 fliG 3574704..3575720 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IRJ24_RS18730 fliF 3575733..3577344 (-) 1612 Protein_3629 flagellar basal-body MS-ring/collar protein FliF -
  IRJ24_RS18735 fliE 3577390..3577710 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IRJ24_RS18740 flgC 3577721..3578173 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  IRJ24_RS18745 flgB 3578173..3578562 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  IRJ24_RS18750 codY 3578942..3579721 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ24_RS18755 hslU 3579761..3581164 (-) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  IRJ24_RS18760 clpQ 3581181..3581726 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  IRJ24_RS18765 xerC 3581739..3582653 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  IRJ24_RS18770 trmFO 3582721..3584028 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=499248 IRJ24_RS18750 WP_003220850.1 3578942..3579721(-) (codY) [Bacillus subtilis strain N1282-4at]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499248 IRJ24_RS18750 WP_003220850.1 3578942..3579721(-) (codY) [Bacillus subtilis strain N1282-4at]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467