Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ22_RS05340 Genome accession   NZ_CP064092
Coordinates   1023337..1023765 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   A0A1Y0YFI7
Organism   Bacillus licheniformis strain C5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1018337..1028765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS05310 - 1018520..1019128 (+) 609 WP_009328237.1 flavin reductase family protein -
  IRJ22_RS05315 wrbA 1019329..1019940 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  IRJ22_RS05320 - 1020261..1020401 (+) 141 WP_003182211.1 hypothetical protein -
  IRJ22_RS05325 - 1020394..1021227 (+) 834 WP_003182213.1 prohibitin family protein -
  IRJ22_RS05330 - 1021318..1022079 (+) 762 WP_003182215.1 hypothetical protein -
  IRJ22_RS05335 - 1022139..1022978 (+) 840 WP_003182218.1 thymidylate synthase -
  IRJ22_RS05340 nucA/comI 1023337..1023765 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ22_RS05345 lexA 1023961..1024584 (-) 624 WP_003182222.1 transcriptional repressor LexA -
  IRJ22_RS05350 yneA 1024737..1025048 (+) 312 WP_161658308.1 cell division suppressor protein YneA -
  IRJ22_RS05355 - 1025067..1025714 (+) 648 WP_003182227.1 YneB family resolvase-like protein -
  IRJ22_RS05360 - 1025780..1026013 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  IRJ22_RS05365 tkt 1026180..1028183 (+) 2004 WP_095240068.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=499134 IRJ22_RS05340 WP_003182220.1 1023337..1023765(+) (nucA/comI) [Bacillus licheniformis strain C5]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=499134 IRJ22_RS05340 WP_003182220.1 1023337..1023765(+) (nucA/comI) [Bacillus licheniformis strain C5]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCACGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YFI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521