Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ22_RS04375 Genome accession   NZ_CP064092
Coordinates   841169..841948 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain C5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 836169..846948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS04355 trmFO 836866..838170 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRJ22_RS04360 xerC 838237..839151 (+) 915 WP_011197974.1 tyrosine recombinase XerC -
  IRJ22_RS04365 hslV 839165..839710 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  IRJ22_RS04370 hslU 839727..841130 (+) 1404 WP_011197975.1 HslU--HslV peptidase ATPase subunit -
  IRJ22_RS04375 codY 841169..841948 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ22_RS04380 flgB 842302..842691 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  IRJ22_RS04385 flgC 842691..843143 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  IRJ22_RS04390 fliE 843157..843474 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  IRJ22_RS04395 fliF 843525..845126 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  IRJ22_RS04400 fliG 845140..846156 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  IRJ22_RS04405 fliH 846140..846907 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=499130 IRJ22_RS04375 WP_003181756.1 841169..841948(+) (codY) [Bacillus licheniformis strain C5]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499130 IRJ22_RS04375 WP_003181756.1 841169..841948(+) (codY) [Bacillus licheniformis strain C5]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467