Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRJ21_RS00800 Genome accession   NZ_CP064091
Coordinates   169595..170374 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain C1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 164595..175374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS00780 trmFO 165282..166589 (+) 1308 WP_029973471.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRJ21_RS00785 xerC 166659..167576 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  IRJ21_RS00790 hslV 167592..168137 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  IRJ21_RS00795 hslU 168145..169557 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  IRJ21_RS00800 codY 169595..170374 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRJ21_RS00805 flgB 170728..171117 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  IRJ21_RS00810 flgC 171117..171569 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  IRJ21_RS00815 fliE 171580..171900 (+) 321 WP_029973469.1 flagellar hook-basal body complex protein FliE -
  IRJ21_RS00820 fliF 171943..173553 (+) 1611 WP_099721951.1 flagellar basal-body MS-ring/collar protein FliF -
  IRJ21_RS00825 fliG 173566..174582 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IRJ21_RS00830 fliH 174575..175330 (+) 756 WP_017417778.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=499035 IRJ21_RS00800 WP_003154263.1 169595..170374(+) (codY) [Bacillus velezensis strain C1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=499035 IRJ21_RS00800 WP_003154263.1 169595..170374(+) (codY) [Bacillus velezensis strain C1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471