Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IRJ17_RS20895 Genome accession   NZ_CP064090
Coordinates   4578349..4580073 (-) Length   574 a.a.
NCBI ID   WP_242771795.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4573349..4585073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS20875 - 4574052..4574288 (-) 237 WP_242771789.1 hypothetical protein -
  IRJ17_RS20880 - 4574328..4575311 (+) 984 WP_242771792.1 hypothetical protein -
  IRJ17_RS28220 - 4575304..4575429 (+) 126 WP_278189451.1 hypothetical protein -
  IRJ17_RS20885 spo0A 4575723..4576511 (-) 789 WP_005827306.1 sporulation transcription factor Spo0A -
  IRJ17_RS20890 spoIVB 4576850..4578184 (-) 1335 WP_063226844.1 SpoIVB peptidase -
  IRJ17_RS20895 recN 4578349..4580073 (-) 1725 WP_242771795.1 DNA repair protein RecN Machinery gene
  IRJ17_RS20900 argR 4580090..4580539 (-) 450 WP_122965851.1 transcriptional regulator ArgR -
  IRJ17_RS20905 - 4580545..4581402 (-) 858 WP_173595769.1 NAD(+)/NADH kinase -
  IRJ17_RS20910 - 4581516..4582334 (-) 819 WP_122965849.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  IRJ17_RS20915 dxs 4582331..4584214 (-) 1884 WP_242771797.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64591.82 Da        Isoelectric Point: 4.9047

>NTDB_id=499025 IRJ17_RS20895 WP_242771795.1 4578349..4580073(-) (recN) [Brevibacillus parabrevis strain B3]
MLVELSIRNFAIIKSVTVSFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGELRAEVEGLFELPAGHPALAVC
ASVGVQVEQDGMLVVRRDISNQGKSIIRLNGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEVALGAAK
QEYGKLYSSYRKTRQDLERMARNERELVQRIDLLQYQLDEIESASLTPGEDEKLLQQRKKWMNIEKVYATVQDAYRSLHG
DQKGMDWLGHAMGELERGVIYEEQLAPILETVQSAYYQIEDVVHKLRQLSYHLDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATISDELDEMHHYEDRLQQVEKRLQELAADLAVEALELSVIRQECATKLAQEIEQQLKELHMERARFAIDVR
QTPDEEGVEIEGIKRLVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASMADAHFLIKKEMSENETKTIVTKLSEEETVTELARMLSGAEVTAKTEEHA
REMILLGRERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=499025 IRJ17_RS20895 WP_242771795.1 4578349..4580073(-) (recN) [Brevibacillus parabrevis strain B3]
ATGCTAGTGGAACTCTCTATCCGAAATTTTGCCATCATTAAATCGGTTACGGTCTCGTTTCAACGCGGGTTGAACATCCT
GACAGGGGAAACCGGCGCCGGAAAATCGATCATCATCGACGCGCTCGGACTGCTGCTCGGTGGTCGTGCGTCCGCAGATT
TTGTGCGCTACGGCGAGCTGCGCGCAGAGGTGGAAGGGCTGTTTGAACTGCCTGCGGGCCATCCTGCGCTTGCGGTGTGC
GCCAGCGTAGGTGTGCAAGTGGAGCAAGACGGCATGCTCGTCGTCCGCCGGGACATTTCCAACCAGGGAAAAAGCATTAT
TCGTCTGAACGGCCAACTGGTGACGCTTGCCATGCTGCGCGAGCTTGGGCCTTGGCTGGTCACGGTTCACGGCCAGCACG
ACACGCACATGCTGATGCAGGCGGACAAGCATATCAACTGGCTGGATGCGTACGGCGAAGTTGCTTTGGGAGCGGCGAAG
CAGGAATACGGCAAACTGTACTCCTCCTACCGGAAAACGCGACAGGATCTCGAACGGATGGCCCGCAACGAACGCGAGCT
GGTACAGCGCATAGACCTTTTGCAATACCAGCTTGACGAAATCGAAAGCGCTTCGCTTACTCCGGGTGAGGACGAGAAGC
TGCTGCAGCAGCGCAAAAAGTGGATGAACATTGAGAAGGTTTACGCGACCGTCCAGGACGCCTACCGCTCGCTGCACGGC
GATCAGAAGGGCATGGATTGGCTCGGTCACGCCATGGGAGAGCTGGAGCGCGGCGTGATCTACGAGGAGCAGCTTGCGCC
GATTTTGGAGACGGTGCAGTCTGCGTATTACCAGATTGAGGACGTGGTGCACAAGCTGCGCCAGCTTTCGTACCATCTGG
ACTTTGAACCGGAGCAGCTGGCAGAGGTGGAGCGCAGGCTCGACCAGATTCAGTCCTTGAAGCGCAAGTACGGAAAAAGC
GTGGATGACATTTTGGAGTATGCAGCGACCATCTCCGACGAGCTGGACGAAATGCATCACTACGAGGATCGGTTGCAACA
GGTGGAAAAACGGCTGCAGGAGCTGGCGGCTGATTTGGCTGTCGAGGCGCTGGAGCTGTCCGTCATTCGTCAGGAATGCG
CCACGAAGCTCGCGCAGGAAATCGAGCAGCAGCTGAAAGAGCTGCATATGGAACGGGCGCGTTTTGCCATCGACGTCAGA
CAAACCCCTGATGAAGAAGGCGTTGAAATCGAAGGCATCAAGCGGCTCGTGGATGCGAATGGCATGGATCAGATCGAGTT
TTTGATTTCGCCAAACCCGGGGGAACCGCTGCGGCCGTTAGCGAAAATCGCTTCTGGCGGGGAGCTGTCCCGCGTCATGC
TGGCGATCAAGACGATCCTGGCTGGAACCGATCAGGTCGAGACGCTGATTTTTGACGAGGTAGACACGGGAGTCAGCGGC
AGAGCGGCCCAGGCGATTGCGGAAAAGCTCGCCCGCGTCGCGCAAAAACGGCAAGTGCTGTGCATTACGCATTTGCCGCA
GGTAGCTTCCATGGCGGATGCGCATTTTCTGATCAAAAAGGAAATGAGCGAAAACGAGACGAAAACGATCGTGACGAAGC
TGTCGGAAGAAGAGACCGTGACAGAGCTTGCCCGCATGCTGAGCGGGGCAGAAGTAACGGCAAAAACAGAAGAGCACGCG
CGGGAAATGATTTTGCTCGGGCGGGAAAGAAAGGCTGTCAACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.735

98.78

0.491