Detailed information NTG0049901

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HK81_RS15875
• Genome accession: NC_021848
• Coordinates: 1729384..1730673 (-)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:K33 str. CDC_K4557
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1724384..1735673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK81_RS15850 (M636_16220)	bioA	1724443..1725723 (+)	1281	WP_020903988.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
HK81_RS15855 (M636_16225)	-	1725793..1726059 (-)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
HK81_RS15860 (M636_16230)	-	1726200..1726913 (-)	714	WP_020903989.1	hypothetical protein	-
HK81_RS15865 (M636_16235)	-	1726913..1727899 (-)	987	WP_020903990.1	peptidoglycan-binding protein	-
HK81_RS15870 (M636_16240)	serS	1727985..1729292 (-)	1308	WP_020903991.1	serine--tRNA ligase	-
HK81_RS15875 (M636_16245)	rarA	1729384..1730673 (-)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
HK81_RS15880 (M636_16250)	lolA	1730740..1731366 (-)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
HK81_RS15885 (M636_16255)	-	1731441..1734527 (-)	3087	WP_005489025.1	DNA translocase FtsK	-
HK81_RS15890 (M636_16260)	lrp	1734680..1735174 (-)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=49901 HK81_RS15875 WP_021447448.1 1729384..1730673(-) (rarA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=49901 HK81_RS15875 WP_021447448.1 1729384..1730673(-) (rarA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCAATTAAC
GACAAAGAACGAGGGCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCTGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385