Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IRB21_RS09515 Genome accession   NZ_CP064089
Coordinates   1879879..1880658 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain N435-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1874879..1885658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS09495 trmFO 1875583..1876887 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRB21_RS09500 xerC 1876950..1877867 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  IRB21_RS09505 hslV 1877882..1878427 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  IRB21_RS09510 hslU 1878444..1879844 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  IRB21_RS09515 codY 1879879..1880658 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IRB21_RS09520 flgB 1880949..1881338 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  IRB21_RS09525 flgC 1881338..1881790 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  IRB21_RS09530 fliE 1881802..1882119 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  IRB21_RS09535 fliF 1882170..1883762 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  IRB21_RS09540 fliG 1883774..1884790 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  IRB21_RS09545 fliH 1884783..1885547 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=498962 IRB21_RS09515 WP_007499612.1 1879879..1880658(+) (codY) [Bacillus altitudinis strain N435-3]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=498962 IRB21_RS09515 WP_007499612.1 1879879..1880658(+) (codY) [Bacillus altitudinis strain N435-3]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471