Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ISX45_RS11145 Genome accession   NZ_CP064060
Coordinates   2222711..2225068 (-) Length   785 a.a.
NCBI ID   WP_181554535.1    Uniprot ID   A0A7V9Z400
Organism   Thermaerobacillus caldiproteolyticus strain U458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217711..2230068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX45_RS11125 (ISX45_11125) - 2217894..2219318 (+) 1425 WP_194518987.1 N-acetylmuramoyl-L-alanine amidase -
  ISX45_RS11130 (ISX45_11130) dtd 2219363..2219815 (-) 453 WP_181554532.1 D-aminoacyl-tRNA deacylase -
  ISX45_RS11135 (ISX45_11135) - 2219830..2222028 (-) 2199 WP_181554533.1 RelA/SpoT family protein -
  ISX45_RS11140 (ISX45_11140) - 2222199..2222711 (-) 513 WP_181554534.1 adenine phosphoribosyltransferase -
  ISX45_RS11145 (ISX45_11145) recJ 2222711..2225068 (-) 2358 WP_181554535.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ISX45_RS11150 (ISX45_11150) - 2225159..2226019 (-) 861 WP_220129379.1 cation diffusion facilitator family transporter -
  ISX45_RS11155 (ISX45_11155) secDF 2226166..2228418 (-) 2253 WP_194518988.1 protein translocase subunit SecDF -
  ISX45_RS11160 (ISX45_11160) - 2228529..2228825 (-) 297 WP_181554538.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88091.38 Da        Isoelectric Point: 5.3720

>NTDB_id=498892 ISX45_RS11145 WP_181554535.1 2222711..2225068(-) (recJ) [Thermaerobacillus caldiproteolyticus strain U458]
MLTAKTRWDVKHPDVDKSNELAKQLNIAPLVASLLVNRGVDTVKEAEVFLSPMKQPFHDPFLLDGMEQAVARIQQAVQSN
ERILVFGDYDADGVSSTTVMVSALKEIGAIVDFYIPNRFTEGYGPNKKAFCWAKEQGFSLIITVDTGIAAIDEVALANEL
GIDVIITDHHEPGPTLPDAYAIIHPKKPGSTYPFRELAGVGVAFKVAHALLGDVPRHLLDVVAIGTIADLVSLTGENRLL
VAQGLEQLQATTRIGLQALLKQCGIQTKELNEETIGFVIAPRINAVGRLGGADPAVRLLMTEDQDEARMLAKEMDELNRE
RQRLVAEMAEEAAQMVNEQFPPSEHKVLVVAKEGWNPGVVGIVASRLVEQFYRPTIVLSLDPEKGIAKGSARSIHGFDIF
TQLSACRDILPHFGGHPMAAGMTLSIEHVDELRQRLNTLANDILTDDDFIPMTTIDVKCSVSDLTLTAAEQLQKLAPFGV
DNPKPLILIEDVSIQTIRRIGADQSHVKAVFEQDGATIESVGFGYGYLYDEIAPDAKVSVVGELSINEWNHIRKPQLMLC
DVAVHECQLFDIRGMRHVHPLFSSLPREKRLFIAFHEETIEALQLHDYREEICYLSSLKEAEQLHIADRYVVLLDLPPSL
EMMKVLLCSSLPARIYALFYQRETHFFSTLPTRDHFKWFYAFLRKRGIFDLAKYGDELARARGWTKETVHFMVKVFLELE
FITLKDGMVSLVHEPAKRDLTESPTYRLKQAQFELEKLFLYSSYQQLKRFLFEMKGSRTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=498892 ISX45_RS11145 WP_181554535.1 2222711..2225068(-) (recJ) [Thermaerobacillus caldiproteolyticus strain U458]
ATGTTAACCGCGAAAACTCGCTGGGATGTAAAACATCCTGATGTTGATAAAAGCAATGAATTGGCAAAACAATTAAATAT
CGCTCCACTTGTTGCTTCATTGCTTGTAAATCGAGGGGTAGATACGGTAAAAGAAGCAGAGGTATTTTTATCTCCGATGA
AACAACCGTTTCATGATCCGTTTTTACTTGATGGAATGGAGCAAGCAGTGGCGCGTATTCAGCAAGCGGTCCAAAGCAAT
GAGCGCATTCTTGTCTTTGGCGATTACGATGCCGATGGTGTGAGCAGCACAACCGTAATGGTCAGTGCTCTTAAAGAAAT
CGGTGCTATCGTTGATTTTTATATTCCGAATCGCTTTACGGAAGGGTACGGACCGAATAAAAAAGCGTTCTGTTGGGCGA
AAGAACAAGGATTTTCTTTAATCATTACAGTCGATACGGGCATTGCCGCAATTGATGAAGTCGCATTAGCGAACGAGCTT
GGAATTGATGTAATCATTACCGATCACCATGAACCCGGACCAACGTTACCGGATGCGTATGCGATTATTCATCCGAAAAA
ACCCGGAAGTACATATCCATTTCGTGAACTGGCAGGCGTTGGAGTCGCCTTCAAGGTGGCGCACGCGTTACTTGGGGATG
TGCCTCGTCATTTACTCGATGTTGTCGCTATCGGCACTATAGCCGATCTCGTTTCTCTTACGGGAGAAAATCGTCTATTA
GTCGCACAAGGGTTAGAGCAGTTACAGGCAACGACACGTATCGGGTTGCAGGCGTTATTGAAACAGTGCGGCATTCAAAC
GAAGGAATTAAATGAAGAGACAATCGGGTTTGTCATTGCTCCGCGCATTAATGCGGTCGGACGGTTAGGGGGAGCCGATC
CCGCTGTACGGCTGTTGATGACAGAAGATCAGGACGAAGCACGAATGCTAGCGAAGGAAATGGACGAGCTGAATCGAGAG
AGGCAGCGACTTGTGGCGGAAATGGCAGAAGAAGCAGCACAAATGGTCAACGAACAATTTCCACCTTCGGAACATAAAGT
GCTTGTAGTGGCGAAGGAAGGTTGGAATCCAGGAGTTGTCGGTATCGTCGCTTCGCGGCTTGTTGAGCAGTTTTATCGTC
CAACCATCGTCCTTAGTCTTGATCCTGAAAAAGGAATTGCGAAGGGCTCTGCGCGAAGCATTCATGGATTTGATATATTC
ACTCAGCTATCGGCATGTCGTGATATTTTACCGCACTTCGGCGGGCATCCGATGGCGGCCGGAATGACGTTATCGATTGA
GCATGTGGATGAGCTGCGTCAGCGCCTCAATACATTAGCGAACGACATATTGACAGACGATGATTTTATTCCAATGACGA
CCATTGATGTTAAATGTTCGGTATCCGATTTGACGCTCACAGCGGCTGAGCAGTTGCAAAAGCTCGCGCCATTTGGAGTC
GACAATCCGAAGCCGCTCATTTTAATTGAAGATGTCTCCATCCAAACGATTCGCCGCATCGGTGCCGATCAGTCGCACGT
AAAAGCCGTATTTGAACAGGATGGCGCAACGATTGAAAGCGTGGGTTTTGGCTACGGCTATTTGTATGACGAAATTGCTC
CTGATGCGAAAGTATCCGTCGTTGGAGAACTATCCATTAATGAATGGAACCATATTCGTAAACCGCAACTGATGCTATGT
GATGTTGCTGTACATGAATGTCAACTGTTTGACATTCGCGGCATGCGTCATGTACATCCGCTGTTTTCCTCTCTTCCGCG
GGAAAAGAGGCTGTTTATTGCTTTTCATGAGGAGACAATAGAAGCTTTACAGTTACACGATTATCGTGAAGAAATATGCT
ATCTTTCTTCGCTGAAAGAAGCAGAGCAGCTTCACATTGCTGATCGCTATGTCGTACTGCTAGACTTACCGCCATCGCTA
GAAATGATGAAAGTTTTATTATGTTCTAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
TAGCACGTTGCCCACGCGCGACCATTTTAAATGGTTTTATGCGTTTTTACGGAAGCGCGGGATTTTTGATTTAGCCAAAT
ATGGCGATGAATTGGCGCGGGCACGCGGCTGGACAAAGGAAACGGTTCATTTTATGGTAAAAGTGTTTTTGGAACTAGAA
TTTATTACACTAAAAGATGGAATGGTTTCTCTTGTTCATGAGCCGGCTAAACGCGATTTAACTGAGTCACCTACATATCG
TTTGAAACAAGCTCAATTCGAGCTGGAAAAACTCTTTTTATACTCATCGTATCAACAATTAAAGCGTTTCCTTTTCGAGA
TGAAAGGTTCGCGAACATATGAGGAGGCAAACGTGTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(305-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V9Z400

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.917

99.745

0.548