Detailed information NTG0498843

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ISP08_RS06160
• Genome accession: NZ_CP064056
• Coordinates: 1266031..1268427 (+)
• Length: 798 a.a.
• NCBI ID: WP_195718048.1
• Uniprot ID: A0A7T1B1Z4
• Organism: Staphylococcus lloydii strain 23_2_7_LY
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1261031..1273427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ISP08_RS06140 (ISP08_06140)	sal	1261214..1262848 (+)	1635	WP_195718045.1	Sal family ABC-F type ribosomal protection protein	-
ISP08_RS06145 (ISP08_06145)	-	1262913..1264052 (+)	1140	WP_195718046.1	cysteine desulfurase family protein	-
ISP08_RS06150 (ISP08_06150)	mnmA	1264056..1265168 (+)	1113	WP_048793524.1	tRNA 2-thiouridine(34) synthase MnmA	-
ISP08_RS06155 (ISP08_06155)	-	1265349..1266026 (+)	678	WP_195718047.1	tetratricopeptide repeat protein	-
ISP08_RS06160 (ISP08_06160)	recD2	1266031..1268427 (+)	2397	WP_195718048.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ISP08_RS06165 (ISP08_06165)	alaS	1268733..1271363 (+)	2631	WP_195718049.1	alanine--tRNA ligase	-
ISP08_RS06170 (ISP08_06170)	-	1271429..1271692 (+)	264	WP_048793528.1	IreB family regulatory phosphoprotein	-
ISP08_RS06175 (ISP08_06175)	ruvX	1271695..1272123 (+)	429	WP_048793529.1	Holliday junction resolvase RuvX	-
ISP08_RS06180 (ISP08_06180)	-	1272140..1272472 (+)	333	WP_195718050.1	DUF1292 domain-containing protein	-
ISP08_RS06185 (ISP08_06185)	-	1272758..1273393 (+)	636	WP_195718051.1	O-methyltransferase	-

Sequence

Protein

• Length: 798 a.a.
• Molecular weight: 90071.54 Da
• Isoelectric Point: 4.5275

>NTDB_id=498843 ISP08_RS06160 WP_195718048.1 1266031..1268427(+) (recD2) [Staphylococcus lloydii strain 23_2_7_LY]
MADSTLFNYSMVKGTVDAILFQNKDNFYTVLKVDTIESNETFDSMPTVVGFFPEVVEGDVYTFKGQVATHPKYGKQLKAE
TFEKELPQTKEAIVSYLSSGLFKGIGKKTAQSIVNTLGENTISDILNDATVLEKVPGLPKKKQQQIAEQIASNQETERII
IRLHDLGFGPKLAMNIYQTYLGETLNVIEKSPYQLVYDVKGIGFNKADILAKNIGIQYNDPERIKAGILYQLEEECIKQG
HTYLPSQFLIDNVQDMLSNPPAEEIERNQIEAQIEQLVNDTKLIQKEDQFAIPSLYYSEIKSVQNLYRNFTYTKKLKDME
TSELLLEIGDIEDKNNVSYAESQREALQTAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKEDDYPIVLG
APTGRASKRLSESTDLEAMTIHRLIGWNQDTQPEDILDNEINAKLIIIDEMSMVDTWLFHQFMSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQEGSSIIELAHRIKLNQKVDITQRFHDRNFINCSTEQIPEVVDKVVNSAV
SKGYDMSDIQVLAPMYKGSAGIKKLNSVLQGILNPKEKDTREIEFGEVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALDKDVVIVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYYRMLQKPILYTGLTRAKQSLVFL
GDPQAFDLGLKTNGQVRMTQLCALLQAYFKNDETDLQTNEEQINSSFDASIELSETTIYKIDPMINMGQMSPYDFVND

Nucleotide

• Length: 2397 bp

>NTDB_id=498843 ISP08_RS06160 WP_195718048.1 1266031..1268427(+) (recD2) [Staphylococcus lloydii strain 23_2_7_LY]
ATGGCTGATTCTACACTGTTTAACTATTCAATGGTTAAAGGCACGGTTGATGCAATACTTTTTCAAAATAAAGACAACTT
CTATACCGTGTTAAAAGTCGATACAATTGAATCAAATGAAACCTTTGATAGTATGCCAACAGTCGTAGGATTTTTCCCTG
AAGTTGTTGAAGGTGATGTATATACTTTCAAAGGACAAGTTGCTACCCATCCGAAGTATGGGAAACAATTAAAGGCCGAA
ACATTCGAAAAAGAATTGCCGCAAACAAAAGAAGCCATCGTCAGTTATCTTTCTAGCGGTTTATTTAAAGGTATAGGTAA
AAAGACTGCACAAAGTATCGTCAACACCTTAGGTGAAAATACAATTTCAGATATTTTAAACGATGCTACAGTACTTGAAA
AAGTGCCTGGATTACCTAAGAAAAAGCAACAACAAATTGCCGAACAAATCGCGAGTAATCAAGAAACTGAACGTATTATT
ATTCGATTACATGATTTAGGCTTTGGTCCTAAATTAGCCATGAATATTTATCAAACATATCTTGGCGAAACGTTAAATGT
AATTGAAAAAAGTCCGTATCAACTTGTTTATGATGTAAAAGGTATTGGTTTTAATAAAGCAGACATATTAGCTAAAAATA
TAGGCATTCAATATAATGATCCAGAACGTATTAAAGCAGGTATTTTATATCAATTAGAAGAAGAGTGTATTAAACAAGGA
CATACTTATTTGCCAAGTCAATTTTTAATAGATAATGTACAAGATATGTTATCAAATCCACCAGCAGAAGAAATAGAAAG
AAATCAAATTGAAGCACAAATTGAGCAACTCGTTAATGATACTAAATTAATACAAAAAGAGGACCAGTTTGCAATTCCAA
GTTTGTATTACTCAGAAATTAAAAGTGTACAAAATCTCTATCGTAATTTTACGTATACGAAGAAATTAAAAGATATGGAA
ACTTCGGAACTATTGTTAGAAATTGGAGATATTGAAGATAAAAACAACGTCAGCTATGCCGAATCACAAAGAGAAGCTTT
ACAAACAGCGATGAATTCTAAAGTGATGTTATTAACTGGAGGACCTGGTACTGGTAAAACCACTGTTATTAAAGGCATTG
TAGAATTATATGCTGAAATTCATGGTTTATCTTTAGATTACGATGATTATAAGGAAGATGATTACCCAATTGTATTAGGC
GCACCAACAGGTAGAGCTTCTAAAAGATTATCTGAATCAACAGACTTAGAAGCAATGACGATTCATCGGTTAATTGGGTG
GAATCAAGATACACAACCAGAAGATATATTAGATAATGAAATTAATGCAAAATTAATCATTATAGATGAGATGTCTATGG
TAGATACGTGGTTATTCCATCAATTTATGAGTGCCGTTCCTATAGATGCACAAGTTATTTTAGTTGGAGATGAAGACCAA
TTACCTTCAGTGGGTCCTGGACAAGTTTTTAAAGATTTAATTGATTCTAAAGTAATTCCAAGAGTTAATCTTACTGAAGT
TTATCGTCAACAAGAAGGTTCTAGTATTATAGAGTTGGCACATCGCATTAAATTAAATCAAAAGGTCGACATTACGCAAC
GTTTTCATGATAGAAACTTTATAAATTGTTCTACGGAACAAATTCCTGAAGTCGTTGACAAAGTAGTTAATAGTGCAGTT
TCAAAAGGGTATGATATGAGTGATATCCAAGTATTAGCACCTATGTATAAAGGGTCAGCAGGCATAAAAAAATTAAATTC
TGTATTACAAGGTATCTTGAATCCTAAGGAAAAAGATACAAGGGAAATCGAATTTGGTGAAGTATTATTTCGTAAAGGCG
ATAAAGTTTTACAACTGGTCAATCGCCCTAACGATAATATCTTTAATGGTGATATTGGCGTTATAGTTGGCATATTTTGG
GCAAAAGAAAATGCTTTAGACAAAGATGTCGTAATTGTAGATTTTGAAGGCAATGAAATCACCTTTACTAGACAAGATTT
AATGGAACTCACACATGCCTATTGCACGTCTATCCATAAATCTCAAGGTTCGGAATTTCCGATTGTCATTATGCCTATGG
TCAAACAATATTATAGAATGTTACAGAAGCCTATCCTATATACTGGTTTAACACGAGCCAAACAGTCTTTAGTATTTTTA
GGCGATCCACAAGCCTTTGATTTAGGTTTGAAAACGAATGGGCAAGTTAGAATGACTCAACTCTGTGCTTTATTACAAGC
ATACTTTAAAAATGACGAAACTGATTTGCAAACGAACGAAGAACAGATTAATAGTAGTTTTGATGCTTCAATAGAATTAA
GCGAAACTACAATTTACAAAATAGACCCCATGATTAATATGGGGCAAATGTCACCTTATGACTTCGTTAATGATTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix domain (HHH_5) (103-149)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

3D structure

• AlphaFold DB: A0A7T1B1Z4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.37	99.499	0.491