Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IRT44_RS03085 Genome accession   NZ_CP064048
Coordinates   638030..638983 (-) Length   317 a.a.
NCBI ID   WP_230077433.1    Uniprot ID   -
Organism   Brevibacillus sedimenti strain PCH 117     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633030..643983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRT44_RS03060 (IRT44_03030) - 633306..633851 (+) 546 WP_171566288.1 GbsR/MarR family transcriptional regulator -
  IRT44_RS03065 (IRT44_03035) - 633973..634983 (-) 1011 WP_230077431.1 LLM class flavin-dependent oxidoreductase -
  IRT44_RS03070 (IRT44_03040) - 635224..636150 (-) 927 WP_171566345.1 siderophore ABC transporter substrate-binding protein -
  IRT44_RS03075 (IRT44_03045) - 636338..637096 (-) 759 WP_230077432.1 ABC transporter ATP-binding protein -
  IRT44_RS03080 (IRT44_03050) - 637090..638040 (-) 951 WP_171566291.1 iron chelate uptake ABC transporter family permease subunit -
  IRT44_RS03085 (IRT44_03055) ceuB 638030..638983 (-) 954 WP_230077433.1 ABC transporter permease Machinery gene
  IRT44_RS03090 (IRT44_03060) - 639590..641167 (-) 1578 WP_230077434.1 SagB family peptide dehydrogenase -
  IRT44_RS03095 (IRT44_03065) - 641189..643132 (-) 1944 WP_171566294.1 TOMM precursor leader peptide-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34786.87 Da        Isoelectric Point: 10.0586

>NTDB_id=498724 IRT44_RS03085 WP_230077433.1 638030..638983(-) (ceuB) [Brevibacillus sedimenti strain PCH 117]
MKKRYLFTALIALSVTSIFIGVKDISPLDLFGLREDQAQILLVSRLPRLISIIMAGASMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGVLVSLLLFTSASPLQKMIVAFAFALIGTFVFMKILDRIKMKDSIFIPLVGLMFGNIITSISTFFAYKYDLI
QNISSWLQGDFSMIMKGRYELLYISIPLLILAYLYANKFTVAGMGEEFSKNLGLNYKQVVNVGLIIVALVTSSVVLTVGT
IPFLGLIIPNIVSLYLGDHLKKSLAHTALLGAVFVLFCDILGRIIIYPYEISISLTVGVIGSGIFAYLLMRRQAHGG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=498724 IRT44_RS03085 WP_230077433.1 638030..638983(-) (ceuB) [Brevibacillus sedimenti strain PCH 117]
ATGAAAAAGAGATATCTGTTTACTGCGCTTATCGCACTATCGGTTACATCCATTTTCATCGGCGTCAAGGACATCTCCCC
GCTGGATCTGTTCGGCCTTCGTGAAGACCAGGCGCAGATCTTGTTGGTCAGCAGACTGCCTCGACTGATCAGCATTATCA
TGGCGGGCGCGAGTATGAGCATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAACAAGTTTGTCTCCCCGACGACGGCG
GGAACGCTGGACTCGGCCAGGCTGGGTGTGTTGGTATCCTTGCTGCTCTTTACGAGCGCAAGTCCTCTGCAAAAGATGAT
TGTTGCGTTTGCATTTGCGCTAATCGGAACATTCGTGTTTATGAAAATTCTTGATCGAATCAAGATGAAAGACTCCATTT
TTATCCCGCTTGTGGGGCTGATGTTTGGCAACATCATTACGTCCATTTCTACCTTTTTTGCGTACAAATACGACCTGATT
CAAAACATATCGTCTTGGCTCCAAGGGGATTTCTCAATGATTATGAAAGGCAGATATGAACTGCTGTACATAAGCATTCC
GCTGCTCATCCTCGCGTACCTGTACGCCAACAAGTTTACCGTGGCAGGGATGGGAGAGGAATTTTCCAAAAACCTGGGGC
TGAACTACAAGCAAGTGGTGAATGTCGGGTTAATCATCGTCGCTCTGGTGACGTCGTCCGTGGTATTGACGGTGGGAACG
ATTCCGTTCCTGGGGTTGATTATCCCAAACATCGTCAGCCTCTACTTGGGCGATCATCTGAAGAAAAGCCTTGCTCACAC
GGCTTTGCTGGGTGCAGTCTTCGTCCTGTTTTGCGACATACTCGGCCGGATCATTATTTATCCGTACGAGATTTCCATCA
GTCTTACCGTTGGGGTCATCGGAAGCGGCATTTTTGCGTACTTGTTGATGAGGAGACAGGCACATGGGGGATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

98.738

0.53