Detailed information NTG0498697

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: KIK01_RS04590
• Genome accession: NZ_CP075489
• Coordinates: 892726..895254 (+)
• Length: 842 a.a.
• NCBI ID: WP_056936400.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei strain ob4.1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 887726..900254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIK01_RS04570 (KIK01_04570)	-	888368..889666 (+)	1299	WP_016264986.1	pyrimidine-nucleoside phosphorylase	-
KIK01_RS04575 (KIK01_04575)	-	889903..891237 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
KIK01_RS04580 (KIK01_04580)	-	891390..892049 (+)	660	WP_016264988.1	histidine phosphatase family protein	-
KIK01_RS04585 (KIK01_04585)	-	892061..892720 (+)	660	WP_016264989.1	tetratricopeptide repeat protein	-
KIK01_RS04590 (KIK01_04590)	recD/recD2/recDB	892726..895254 (+)	2529	WP_056936400.1	ATP-dependent RecD-like DNA helicase	Machinery gene
KIK01_RS04595 (KIK01_04595)	-	895297..896508 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
KIK01_RS04600 (KIK01_04600)	-	896569..896808 (-)	240	WP_213923424.1	hypothetical protein	-
KIK01_RS04605 (KIK01_04605)	-	897073..897684 (+)	612	WP_016264992.1	LysE family transporter	-
KIK01_RS04610 (KIK01_04610)	-	897776..898888 (+)	1113	WP_016264993.1	DNA alkylation repair protein	-
KIK01_RS04615 (KIK01_04615)	-	899067..899783 (+)	717	WP_099960278.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93311.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=498697 KIK01_RS04590 WP_056936400.1 892726..895254(+) (recD/recD2/recDB) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDGVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPAVEKPTPAKEAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=498697 KIK01_RS04590 WP_056936400.1 892726..895254(+) (recD/recD2/recDB) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATTGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATCGGTCAAAAAACGGCAGAGAAGATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGTTGACGATTAATAATGGGATG
GAACAAATTATCATTGGCCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGGGCGGATAATT
TAGCCGAGAAAATTGGCTTTGCAGCCGATTCGCCAGCACGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACA
AATCAAGCGGGTGATACGTTCACTCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCACGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGACGGCAAAGTGGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGTTTTAAGATGAGCTATGATGGTGTTCAAAA
AAATGCAATCAAATTGGCGATGACGCACAGAGCCTTTCTACTAACGGGGGGCCCTGGTACGGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCGGCACCCACCGGGCGAGCCGCTAAACGGATGAGTGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGTTT
GTTAGGGATTACGGGCCGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCGCTGATTCGAGCGGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATTTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAAGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCGAAGGTCGATGATCGTAAGAAACAAGTTAGTTTAGGCAATGTTC
ATTACCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAATTAAACGTCTTTAACGGTGAAATTGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCATTGGTTAACCAATACCAGCGGATGCTGAAACGGAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTATTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAAGCAGCTAAGGAATTATCCGCAAACCGACAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACTGCAAGTGTTGGTTTAACGGAAGCTA
AACCGGCTGTTGAAAAGCCAACGCCGGCTAAAGAAGCGGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• AAA domain (AAA_30) (343-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418