Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   KIK01_RS02345 Genome accession   NZ_CP075489
Coordinates   481606..483969 (+) Length   787 a.a.
NCBI ID   WP_025016289.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 476606..488969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS02320 (KIK01_02320) - 478648..478908 (+) 261 WP_011374097.1 IreB family regulatory phosphoprotein -
  KIK01_RS02325 (KIK01_02325) ruvX 478908..479351 (+) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  KIK01_RS02330 (KIK01_02330) - 479401..479712 (+) 312 WP_011374099.1 DUF1292 domain-containing protein -
  KIK01_RS02335 (KIK01_02335) rnhC 479900..480817 (-) 918 WP_011374100.1 ribonuclease HIII -
  KIK01_RS02340 (KIK01_02340) - 481011..481550 (+) 540 WP_016264660.1 CvpA family protein -
  KIK01_RS02345 (KIK01_02345) mutS/mutS2 481606..483969 (+) 2364 WP_025016289.1 endonuclease MutS2 Machinery gene
  KIK01_RS02350 (KIK01_02350) trxA 484109..484420 (+) 312 WP_011374103.1 thioredoxin -
  KIK01_RS02355 (KIK01_02355) - 484622..484771 (+) 150 WP_035145780.1 teichoic acid D-Ala incorporation-associated protein DltX -
  KIK01_RS02360 (KIK01_02360) dltA 484795..486321 (+) 1527 WP_035145773.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  KIK01_RS02365 (KIK01_02365) dltB 486314..487522 (+) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  KIK01_RS02370 (KIK01_02370) dltC 487552..487788 (+) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87606.84 Da        Isoelectric Point: 6.1611

>NTDB_id=498680 KIK01_RS02345 WP_025016289.1 481606..483969(+) (mutS/mutS2) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMAKAKEKANAIVEKAEVKADKVITKLRDMQMNQGARIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=498680 KIK01_RS02345 WP_025016289.1 481606..483969(+) (mutS/mutS2) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGCTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGAATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCGCAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAGGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGTAACGACCGCTACGTGATTCCTGTTAAACAAGAATACCGCGGCCAATTCGGTGGTGTGGTACATG
ATCAAAGTGCCAGTGGGCAAACCCTATTCATGGAACCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAACAACAAGAAATCGAACGGATTTTGGCGGAATTATCAGAAGCCATCATGCCGGAACGTCACAATATTTTAGC
GAATGCTGAATTATTGGGTCAACTTGATTTCGTGAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAGGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTAACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACGTT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAAGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACTCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTGCCTGGTCGGAGTAATGCGTTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGGCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGGCGAAGGCTAAGGAAAAAGCGAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTACGTGATATGCAGATGAATCAAGGCGCACGGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAGGTCCTCCAACGGGCTAAGCGGCGTCAAACGCTT
AAAGTTGGGGATGACGTCTTGGTCACGTCTTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGATTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCTAATGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTGACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGAGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGTAATGGTGCAACCATTGTGACATTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.574

100

0.466