Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H9J98_RS15645 Genome accession   NZ_CP064041
Coordinates   3336269..3336994 (+) Length   241 a.a.
NCBI ID   WP_079854046.1    Uniprot ID   A0A9P2QR04
Organism   Vibrio parahaemolyticus strain XMO116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3331269..3341994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS15630 (H9J98_15505) - 3332374..3334695 (+) 2322 WP_020839939.1 Tex family protein -
  H9J98_RS15635 (H9J98_15510) - 3334829..3335293 (-) 465 WP_005459035.1 hypothetical protein -
  H9J98_RS15640 (H9J98_15515) bioH 3335417..3336184 (-) 768 WP_069528590.1 pimeloyl-ACP methyl ester esterase BioH -
  H9J98_RS15645 (H9J98_15520) comF 3336269..3336994 (+) 726 WP_079854046.1 phosphoribosyltransferase family protein Machinery gene
  H9J98_RS15650 (H9J98_15525) nfuA 3337092..3337676 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  H9J98_RS15655 (H9J98_15530) nudE 3337897..3338466 (+) 570 WP_065769407.1 ADP compounds hydrolase NudE -
  H9J98_RS15660 (H9J98_15535) cysQ 3338507..3339334 (+) 828 WP_025518553.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H9J98_RS15665 (H9J98_15540) - 3339621..3340382 (-) 762 WP_222133465.1 type II secretion system protein N -
  H9J98_RS15670 (H9J98_15545) - 3340384..3340875 (-) 492 WP_065769406.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27640.72 Da        Isoelectric Point: 8.8553

>NTDB_id=498666 H9J98_RS15645 WP_079854046.1 3336269..3336994(+) (comF) [Vibrio parahaemolyticus strain XMO116]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQSISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRRNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=498666 H9J98_RS15645 WP_079854046.1 3336269..3336994(+) (comF) [Vibrio parahaemolyticus strain XMO116]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGAGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCAGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473