Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H9K44_RS14700 Genome accession   NZ_CP064035
Coordinates   3154583..3155308 (+) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   A0A4Z6AQU4
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149583..3160308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS14685 (H9K44_14670) - 3150686..3153007 (+) 2322 WP_141179767.1 Tex family protein -
  H9K44_RS14690 (H9K44_14675) - 3153143..3153607 (-) 465 WP_005459035.1 hypothetical protein -
  H9K44_RS14695 (H9K44_14680) bioH 3153731..3154498 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  H9K44_RS14700 (H9K44_14685) comF 3154583..3155308 (+) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  H9K44_RS14705 (H9K44_14690) nfuA 3155406..3155990 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  H9K44_RS14710 (H9K44_14695) nudE 3156211..3156780 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  H9K44_RS14715 (H9K44_14700) cysQ 3156821..3157648 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H9K44_RS14720 (H9K44_14705) - 3157934..3158695 (-) 762 WP_062854600.1 type II secretion system protein N -
  H9K44_RS14725 (H9K44_14710) - 3158697..3159188 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=498619 H9K44_RS14700 WP_017449060.1 3154583..3155308(+) (comF) [Vibrio parahaemolyticus strain DLM1799]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=498619 H9K44_RS14700 WP_017449060.1 3154583..3155308(+) (comF) [Vibrio parahaemolyticus strain DLM1799]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAGTTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTATTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z6AQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485