Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IP614_RS25185 Genome accession   NZ_CP063975
Coordinates   4980081..4980860 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain N435-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4975081..4985860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP614_RS25160 uppS 4975829..4976605 (-) 777 WP_000971296.1 isoprenyl transferase -
  IP614_RS25165 frr 4976691..4977248 (-) 558 WP_000531501.1 ribosome recycling factor -
  IP614_RS25170 pyrH 4977251..4977973 (-) 723 WP_000042668.1 UMP kinase -
  IP614_RS25175 tsf 4978040..4978927 (-) 888 WP_242785033.1 translation elongation factor Ts -
  IP614_RS25180 rpsB 4979031..4979732 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  IP614_RS25185 codY 4980081..4980860 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IP614_RS25190 hslU 4980938..4982329 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  IP614_RS25195 hslV 4982352..4982894 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  IP614_RS25200 xerC 4982937..4983836 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  IP614_RS25205 trmFO 4983902..4985206 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=498239 IP614_RS25185 WP_000421290.1 4980081..4980860(-) (codY) [Bacillus cereus strain N435-1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=498239 IP614_RS25185 WP_000421290.1 4980081..4980860(-) (codY) [Bacillus cereus strain N435-1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459