Detailed information NTG0049817

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HK86_RS07250
• Genome accession: NC_021847
• Coordinates: 1546392..1547681 (+)
• Length: 429 a.a.
• NCBI ID: WP_275540427.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:Kuk str. FDA_R31
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1541392..1552681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK86_RS07235 (M634_07445)	lrp	1541891..1542385 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
HK86_RS07240 (M634_07450)	-	1542538..1545624 (+)	3087	WP_020840366.1	DNA translocase FtsK	-
HK86_RS07245 (M634_07455)	lolA	1545699..1546325 (+)	627	WP_017448307.1	outer membrane lipoprotein chaperone LolA	-
HK86_RS07250 (M634_07460)	rarA	1546392..1547681 (+)	1290	WP_275540427.1	replication-associated recombination protein A	Machinery gene
HK86_RS07255 (M634_07465)	serS	1547773..1549080 (+)	1308	WP_020840368.1	serine--tRNA ligase	-
HK86_RS07260 (M634_07470)	-	1549274..1550173 (+)	900	WP_020840369.1	N-acetylmuramidase family protein	-
HK86_RS07265 (M634_07475)	-	1550148..1550591 (+)	444	WP_079855457.1	hypothetical protein	-
HK86_RS07270 (M634_07480)	-	1550726..1550992 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
HK86_RS07275 (M634_07485)	bioA	1551062..1552342 (-)	1281	WP_020840371.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47504.72 Da
• Isoelectric Point: 5.8528

>NTDB_id=49817 HK86_RS07250 WP_275540427.1 1546392..1547681(+) (rarA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNCLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=49817 HK86_RS07250 WP_275540427.1 1546392..1547681(+) (rarA) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTGCCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385