Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SSUD12_RS03945 Genome accession   NC_017621
Coordinates   778868..779707 (+) Length   279 a.a.
NCBI ID   WP_014637808.1    Uniprot ID   G7SFL1
Organism   Streptococcus suis D12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 773868..784707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS03915 (SSUD12_0759) - 774333..775211 (+) 879 WP_014637805.1 F0F1 ATP synthase subunit gamma -
  SSUD12_RS03920 (SSUD12_0760) atpD 775231..776637 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  SSUD12_RS03925 (SSUD12_0761) - 776647..777063 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  SSUD12_RS03930 (SSUD12_0762) - 777123..777347 (+) 225 WP_024387485.1 DUF1146 family protein -
  SSUD12_RS03935 (SSUD12_0763) murA 777371..778654 (+) 1284 WP_014637806.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSUD12_RS03940 (SSUD12_0764) - 778647..778838 (+) 192 WP_014637807.1 DNA-directed RNA polymerase subunit beta -
  SSUD12_RS03945 (SSUD12_0765) endA 778868..779707 (+) 840 WP_014637808.1 DNA/RNA non-specific endonuclease Machinery gene
  SSUD12_RS03950 (SSUD12_0766) - 779894..781447 (+) 1554 WP_014637809.1 MFS transporter -
  SSUD12_RS03955 (SSUD12_0767) - 781504..782532 (+) 1029 WP_014637810.1 sugar kinase -
  SSUD12_RS03960 (SSUD12_0768) uidA 782548..784347 (+) 1800 WP_014637811.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30045.25 Da        Isoelectric Point: 6.4989

>NTDB_id=49788 SSUD12_RS03945 WP_014637808.1 778868..779707(+) (endA) [Streptococcus suis D12]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLGDNKSSNVADYSYYVNQSKASEGTPSQELARSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVASVPYGDNNTKTVQGETVPTVANALLAKSTRQYKDREATGNGSTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFIPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=49788 SSUD12_RS03945 WP_014637808.1 778868..779707(+) (endA) [Streptococcus suis D12]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAGGCGATAACAAGAGCAGTAACGTTGCCGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGGTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATCAACGGCAATAAGACTGATTTAGATGCTTCAGTGGCTAGTGTACCTTATGGGGATAACAATACTAA
GACTGTTCAGGGAGAGACGGTACCAACAGTAGCCAACGCTCTATTAGCCAAGTCAACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGTAGTACCTCTTGGACACCTGCGGGTTGGCATCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCATTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SFL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591

Multiple sequence alignment