Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   KIP81_RS08565 Genome accession   NZ_CP075172
Coordinates   1721792..1724254 (+) Length   820 a.a.
NCBI ID   WP_243602819.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716792..1729254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS08545 (KIP81_08535) - 1719193..1719735 (-) 543 WP_243602816.1 CvpA family protein -
  KIP81_RS08550 (KIP81_08540) - 1719741..1720049 (-) 309 WP_004233227.1 hypothetical protein -
  KIP81_RS08555 (KIP81_08545) rnhC 1720170..1721069 (+) 900 WP_243602817.1 ribonuclease HIII -
  KIP81_RS08560 (KIP81_08550) lepB 1721085..1721678 (+) 594 WP_243602818.1 signal peptidase I -
  KIP81_RS08565 (KIP81_08555) recD/recD2/recDB 1721792..1724254 (+) 2463 WP_243602819.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KIP81_RS08570 (KIP81_08560) - 1724496..1724990 (+) 495 WP_074567303.1 hypothetical protein -
  KIP81_RS08575 (KIP81_08565) dinB 1725040..1726137 (-) 1098 WP_021143134.1 DNA polymerase IV -
  KIP81_RS08580 (KIP81_08570) pflB 1726360..1728684 (+) 2325 WP_021143135.1 formate C-acetyltransferase -
  KIP81_RS08585 (KIP81_08575) - 1728745..1729182 (+) 438 WP_243602820.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92381.42 Da        Isoelectric Point: 4.3636

>NTDB_id=497439 KIP81_RS08565 WP_243602819.1 1721792..1724254(+) (recD/recD2/recDB) [Streptococcus equinus strain SheepZ001]
MEYFFSGIVERIIFENASNFFKIVLLEIEDTDSDFDDFEIIVTGTMAEIIEGENYTFWGELTQHPKYGEQLKLTRYERSK
PSSSGLIKYFSSEHFKGIGKKTAEKIVQLYGEDTIDKILEDPSKLDSISGLSKENRDNFVAKLKLNYGTEQILAKLAEYG
LTNRVAFEIFNQYKEESLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADSPQRFRAALVHTLFELSVENGDTYVEAR
DLLENAITILEEARQIELDPAAIAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKHLTRILDTPLSKQFSAEELEEEI
AEVEENFGISYDQVQKDAIKNALQSKVFILTGGPGTGKTTVINGLIETYAALHRIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKELPQLALTKIFRQSEDSTIVTLANQMRQGILPADFTQKKADRSYFEASAQYIPEMIPKIVSAAIKSGISPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLGDQLSFAFGEMNFRKGDKVLHLINDAELNVFNGDIGYITDLIPAKYTESKQDELFMS
FDGTEVSYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVERFTGDEELPEIDSSESITESEIQEQETVKSAPSNSKEENSSKKAEQLSLDIEEELETEEPKIYRLTEENMA
FIDPMIGITQEDIEQFFKRS

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=497439 KIP81_RS08565 WP_243602819.1 1721792..1724254(+) (recD/recD2/recDB) [Streptococcus equinus strain SheepZ001]
ATGGAATACTTCTTTTCTGGCATTGTTGAGCGTATTATTTTTGAAAATGCCAGTAACTTTTTTAAAATCGTACTACTCGA
AATCGAAGATACTGACTCTGATTTCGATGATTTTGAAATCATTGTCACAGGGACAATGGCTGAAATCATTGAAGGAGAAA
ATTATACTTTCTGGGGTGAATTGACCCAGCATCCAAAATACGGTGAGCAGCTTAAACTCACGCGCTACGAGCGTTCAAAA
CCAAGCTCATCTGGATTGATTAAATATTTTTCAAGCGAGCACTTTAAAGGAATTGGTAAAAAAACTGCTGAAAAAATCGT
GCAACTCTACGGCGAAGACACCATCGATAAAATCCTAGAAGACCCAAGTAAACTCGACAGTATTTCAGGACTTTCTAAGG
AAAATCGTGATAATTTTGTTGCCAAATTAAAACTCAATTATGGTACGGAGCAAATCCTTGCCAAACTTGCTGAGTATGGG
TTGACTAACCGTGTGGCTTTTGAGATTTTTAACCAGTACAAGGAGGAAAGCCTTGATATTATCCAAGAAAATCCTTATCA
ACTCGTTGAAGACATCCAAGGGATTGGTTTTAAAATAGCTGACCAACTGGCTGAGCAGTTAGGCATCGAAGCAGATTCTC
CACAACGTTTTCGTGCGGCACTTGTCCACACATTATTCGAACTTTCTGTGGAAAACGGCGATACTTATGTCGAGGCGCGT
GATTTATTAGAAAATGCCATCACTATTCTTGAAGAAGCACGACAAATCGAACTTGACCCCGCAGCTATTGCTAAAGAGTT
ATCAACACTTATTGCTGAAGACAAGGTGCAGAATATCGGTACTAAGATTTTTGACAACACGCTCTTTTATGCTGAAGCAG
GTATCAAAAAACATTTGACGCGTATCCTTGATACCCCACTGTCTAAGCAATTTTCAGCCGAAGAGCTGGAAGAAGAAATC
GCTGAAGTCGAAGAAAATTTTGGAATTTCTTATGACCAAGTGCAAAAAGATGCTATCAAAAATGCCCTGCAAAGCAAAGT
CTTTATCCTAACTGGTGGACCGGGAACAGGAAAAACGACCGTTATCAACGGTTTAATTGAAACCTATGCTGCTCTTCACC
GCATTGACCTTGAGAAAAAAGATATCCCAATCATTCTAGCAGCACCGACTGGTCGTGCAGCCCGTCGTATGAACGAATTG
ACTGGCTTACCAAGTGCCACGATTCACCGCCACCTCGGCTTAAATGGCGATAATGACTATCAAGCTATGGATGATTATCT
TGATTGTGACTTGATTATCATCGATGAGTTTTCAATGGTCGATACATGGCTTGCTAATCAACTGTTTAGCTCTATTTCAT
CAAATACTCAAGTTATCATCGTCGGAGATAGCGACCAACTGCCTTCGGTAGGACCTGGACAAGTTTTGGCAGATTTATTG
AAAATCAAAGAATTACCGCAGTTAGCACTGACAAAAATCTTTAGACAGTCCGAAGATTCAACTATCGTTACTTTAGCCAA
TCAAATGAGACAAGGCATCTTGCCAGCTGATTTCACACAGAAAAAAGCTGACCGCTCTTATTTTGAAGCTAGCGCCCAAT
ACATTCCTGAAATGATTCCAAAAATTGTCAGCGCAGCTATTAAAAGTGGTATCAGCCCGCAAGAAATTCAAATTCTTGCC
CCCATGTACCGCGGAGCAGCTGGGATTAATCGCCTTAATACGATTATCCAAGATTTGTTAAACCCACTCGGTGACCAATT
GTCATTTGCTTTTGGTGAGATGAATTTCCGTAAGGGAGACAAAGTTCTCCACCTCATCAACGATGCCGAACTCAATGTCT
TTAACGGTGATATCGGCTATATTACTGACCTTATTCCTGCCAAATACACCGAGTCTAAGCAAGACGAGCTGTTTATGTCT
TTTGATGGTACTGAAGTGAGCTATCCTCGTAACGAATGGCATAAAATCACACTGGCTTACGCCATGTCTATCCACAAATC
TCAAGGTAGCGAATTTCAGGTTGTTATTCTGCCAATCACACGTCAGAGTCACCGACTCTTGCAGCGTAACCTTATCTATA
CTGCTATTACACGCTCAAAAAGTAAGTTAGTCATGCTGGGAGAAATTGCTGCCTTTGACTACGCGATAAAAAACGAAGGT
GCTAAACGCAACACTTACCTCGTCGAACGTTTCACAGGAGACGAAGAACTCCCTGAAATAGATTCTTCTGAGAGCATCAC
TGAATCTGAAATTCAAGAACAAGAAACAGTTAAAAGCGCTCCTTCAAACTCCAAAGAAGAAAATTCTTCTAAAAAAGCTG
AACAACTCAGCTTGGATATTGAGGAAGAACTTGAAACTGAAGAGCCAAAAATTTATCGCCTAACAGAAGAAAATATGGCA
TTTATCGATCCGATGATTGGTATTACCCAAGAAGATATCGAGCAATTTTTTAAACGTTCATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-635)

AAA domain (AAA_30)

(331-519)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.933

91.463

0.393