Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H4F96_RS01915 Genome accession   NZ_CP075062
Coordinates   415712..416179 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain EC_J_9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410712..421179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4F96_RS01890 (H4F96_01890) rpsG 410853..411323 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H4F96_RS01895 (H4F96_01895) fusA 411420..413534 (+) 2115 WP_000124700.1 elongation factor G -
  H4F96_RS01900 (H4F96_01900) tuf 413605..414789 (+) 1185 WP_000031783.1 elongation factor Tu -
  H4F96_RS01905 (H4F96_01905) bfd 414972..415166 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H4F96_RS01910 (H4F96_01910) bfr 415239..415715 (+) 477 WP_000675515.1 bacterioferritin -
  H4F96_RS01915 (H4F96_01915) pilD 415712..416179 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  H4F96_RS01920 (H4F96_01920) rpsJ 416558..416869 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H4F96_RS01925 (H4F96_01925) rplC 416902..417531 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H4F96_RS01930 (H4F96_01930) rplD 417542..418147 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H4F96_RS01935 (H4F96_01935) rplW 418144..418446 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H4F96_RS01940 (H4F96_01940) rplB 418464..419285 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H4F96_RS01945 (H4F96_01945) rpsS 419302..419580 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H4F96_RS01950 (H4F96_01950) rplV 419595..419927 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H4F96_RS01955 (H4F96_01955) rpsC 419945..420646 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H4F96_RS01960 (H4F96_01960) rplP 420659..421069 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=497280 H4F96_RS01915 WP_000339836.1 415712..416179(-) (pilD) [Escherichia coli strain EC_J_9]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=497280 H4F96_RS01915 WP_000339836.1 415712..416179(-) (pilD) [Escherichia coli strain EC_J_9]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361