Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IM712_RS15675 Genome accession   NZ_CP063768
Coordinates   3213961..3214740 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain KMU01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208961..3219740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS15645 fliH 3209006..3209761 (-) 756 WP_077722194.1 flagellar assembly protein FliH -
  IM712_RS15650 fliG 3209754..3210770 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  IM712_RS15655 fliF 3210783..3212393 (-) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  IM712_RS15660 fliE 3212436..3212756 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  IM712_RS15665 flgC 3212767..3213219 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  IM712_RS15670 flgB 3213219..3213608 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  IM712_RS15675 codY 3213961..3214740 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IM712_RS15680 hslU 3214778..3216181 (-) 1404 WP_069448731.1 HslU--HslV peptidase ATPase subunit -
  IM712_RS15685 hslV 3216198..3216743 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  IM712_RS15690 xerC 3216759..3217676 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  IM712_RS15695 trmFO 3217746..3219053 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=496622 IM712_RS15675 WP_003154263.1 3213961..3214740(-) (codY) [Bacillus velezensis strain KMU01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=496622 IM712_RS15675 WP_003154263.1 3213961..3214740(-) (codY) [Bacillus velezensis strain KMU01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471