Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BACVE_RS20680 Genome accession   NZ_CP063687
Coordinates   4130011..4130790 (-) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain NST6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4125011..4135790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS20650 (BACVE_004168) fliH 4125055..4125810 (-) 756 WP_017417778.1 flagellar assembly protein FliH -
  BACVE_RS20655 (BACVE_004169) fliG 4125803..4126819 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BACVE_RS20660 (BACVE_004170) fliF 4126832..4128442 (-) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  BACVE_RS20665 (BACVE_004171) fliE 4128485..4128805 (-) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  BACVE_RS20670 (BACVE_004172) flgC 4128816..4129268 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  BACVE_RS20675 (BACVE_004173) flgB 4129268..4129657 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BACVE_RS20680 (BACVE_004174) codY 4130011..4130790 (-) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BACVE_RS20685 (BACVE_004175) hslU 4130828..4132231 (-) 1404 WP_017417774.1 HslU--HslV peptidase ATPase subunit -
  BACVE_RS20690 (BACVE_004176) hslV 4132248..4132793 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BACVE_RS20695 (BACVE_004177) xerC 4132809..4133726 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  BACVE_RS20700 (BACVE_004178) trmFO 4133796..4135103 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=496320 BACVE_RS20680 WP_017417775.1 4130011..4130790(-) (codY) [Bacillus velezensis strain NST6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=496320 BACVE_RS20680 WP_017417775.1 4130011..4130790(-) (codY) [Bacillus velezensis strain NST6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471