Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IM698_RS12960 Genome accession   NZ_CP063682
Coordinates   2930031..2930744 (-) Length   237 a.a.
NCBI ID   WP_260809628.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2925031..2935744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS12935 (IM698_12925) - 2926240..2926728 (+) 489 WP_248373633.1 type II secretion system protein M -
  IM698_RS12940 (IM698_12930) - 2926730..2927509 (+) 780 WP_260809627.1 type II secretion system protein N -
  IM698_RS12945 (IM698_12935) cysQ 2927633..2928460 (-) 828 WP_248373638.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IM698_RS12950 (IM698_12940) nudE 2928497..2929048 (-) 552 WP_248373640.1 ADP compounds hydrolase NudE -
  IM698_RS12955 (IM698_12945) nfuA 2929337..2929921 (-) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  IM698_RS12960 (IM698_12950) comF 2930031..2930744 (-) 714 WP_260809628.1 ComF family protein Machinery gene
  IM698_RS12965 (IM698_12955) bioH 2930838..2931614 (+) 777 WP_260809629.1 pimeloyl-ACP methyl ester esterase BioH -
  IM698_RS12970 (IM698_12960) - 2931955..2932428 (+) 474 WP_260809630.1 ATP-dependent Lon protease -
  IM698_RS12975 (IM698_12965) - 2932608..2934938 (-) 2331 WP_260809631.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27330.62 Da        Isoelectric Point: 9.0238

>NTDB_id=496232 IM698_RS12960 WP_260809628.1 2930031..2930744(-) (comF) [Vibrio splendidus strain ED144]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDVHPRWCDSCLNLFESVPRCQRCGLKTLLTVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLIANYTAQEFGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGTVPSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=496232 IM698_RS12960 WP_260809628.1 2930031..2930744(-) (comF) [Vibrio splendidus strain ED144]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACTTATGCAAGCTAGATAAGTCGCA
CAGCGATGTTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAGTAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAC
TATACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTCTGGTTTGCACGCGATCTATCAAAGTT
ATTGGCTTCACGTATCGAGCATCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGAGGCT
TTAATCAAAGTCAGCTGATCGCTAATTACACAGCTCAAGAATTTGGTGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTGACTAAATCCGCACGCTTACATAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACATCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502