Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM02_RS02275 Genome accession   NZ_CP074939
Coordinates   489423..489890 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 06_3235     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 484423..494890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM02_RS02250 (KIM02_02245) rpsG 484564..485034 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KIM02_RS02255 (KIM02_02250) fusA 485131..487245 (+) 2115 WP_000124700.1 elongation factor G -
  KIM02_RS02260 (KIM02_02255) tuf 487316..488500 (+) 1185 WP_000031783.1 elongation factor Tu -
  KIM02_RS02265 (KIM02_02260) bfd 488683..488877 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM02_RS02270 (KIM02_02265) bfr 488950..489426 (+) 477 WP_000675515.1 bacterioferritin -
  KIM02_RS02275 (KIM02_02270) pilD 489423..489890 (-) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM02_RS02280 (KIM02_02275) rpsJ 490269..490580 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM02_RS02285 (KIM02_02280) rplC 490613..491242 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM02_RS02290 (KIM02_02285) rplD 491253..491858 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM02_RS02295 (KIM02_02290) rplW 491855..492157 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM02_RS02300 (KIM02_02295) rplB 492175..492996 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM02_RS02305 (KIM02_02300) rpsS 493013..493291 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM02_RS02310 (KIM02_02305) rplV 493306..493638 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM02_RS02315 (KIM02_02310) rpsC 493656..494357 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM02_RS02320 (KIM02_02315) rplP 494370..494780 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=495743 KIM02_RS02275 WP_000339836.1 489423..489890(-) (pilD) [Escherichia coli strain 06_3235]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=495743 KIM02_RS02275 WP_000339836.1 489423..489890(-) (pilD) [Escherichia coli strain 06_3235]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361