Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM04_RS24770 Genome accession   NZ_CP074932
Coordinates   4896944..4897411 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 07_3337     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4891944..4902411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM04_RS24725 (KIM04_24450) rplP 4892054..4892464 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM04_RS24730 (KIM04_24455) rpsC 4892477..4893178 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM04_RS24735 (KIM04_24460) rplV 4893196..4893528 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM04_RS24740 (KIM04_24465) rpsS 4893543..4893821 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM04_RS24745 (KIM04_24470) rplB 4893838..4894659 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM04_RS24750 (KIM04_24475) rplW 4894677..4894979 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM04_RS24755 (KIM04_24480) rplD 4894976..4895581 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM04_RS24760 (KIM04_24485) rplC 4895592..4896221 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM04_RS24765 (KIM04_24490) rpsJ 4896254..4896565 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM04_RS24770 (KIM04_24495) pilD 4896944..4897411 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM04_RS24775 (KIM04_24500) bfr 4897408..4897884 (-) 477 WP_000675515.1 bacterioferritin -
  KIM04_RS24780 (KIM04_24505) bfd 4897957..4898151 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM04_RS24785 (KIM04_24510) tuf 4898334..4899518 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM04_RS24790 (KIM04_24515) fusA 4899589..4901703 (-) 2115 WP_000124700.1 elongation factor G -
  KIM04_RS24795 (KIM04_24520) rpsG 4901800..4902270 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=495637 KIM04_RS24770 WP_000339836.1 4896944..4897411(+) (pilD) [Escherichia coli strain 07_3337]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=495637 KIM04_RS24770 WP_000339836.1 4896944..4897411(+) (pilD) [Escherichia coli strain 07_3337]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361