Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM05_RS26590 Genome accession   NZ_CP074928
Coordinates   5142436..5142903 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 07_3636     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5137436..5147903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM05_RS26545 (KIM05_26210) rplP 5137546..5137956 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM05_RS26550 (KIM05_26215) rpsC 5137969..5138670 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM05_RS26555 (KIM05_26220) rplV 5138688..5139020 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM05_RS26560 (KIM05_26225) rpsS 5139035..5139313 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM05_RS26565 (KIM05_26230) rplB 5139330..5140151 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM05_RS26570 (KIM05_26235) rplW 5140169..5140471 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM05_RS26575 (KIM05_26240) rplD 5140468..5141073 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM05_RS26580 (KIM05_26245) rplC 5141084..5141713 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM05_RS26585 (KIM05_26250) rpsJ 5141746..5142057 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM05_RS26590 (KIM05_26255) pilD 5142436..5142903 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM05_RS26595 (KIM05_26260) bfr 5142900..5143376 (-) 477 WP_000675515.1 bacterioferritin -
  KIM05_RS26600 (KIM05_26265) bfd 5143449..5143643 (-) 195 WP_032346861.1 bacterioferritin-associated ferredoxin -
  KIM05_RS26605 (KIM05_26270) tuf 5143826..5145010 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM05_RS26610 (KIM05_26275) fusA 5145081..5147195 (-) 2115 WP_000124700.1 elongation factor G -
  KIM05_RS26615 (KIM05_26280) rpsG 5147292..5147762 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=495559 KIM05_RS26590 WP_000339836.1 5142436..5142903(+) (pilD) [Escherichia coli strain 07_3636]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=495559 KIM05_RS26590 WP_000339836.1 5142436..5142903(+) (pilD) [Escherichia coli strain 07_3636]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361