Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   INP70_RS19360 Genome accession   NZ_CP063420
Coordinates   181452..182312 (-) Length   286 a.a.
NCBI ID   WP_322621731.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176452..187312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS00845 gspL 176710..177921 (+) 1212 WP_193836541.1 type II secretion system protein GspL -
  INP70_RS00850 - 177931..178428 (+) 498 WP_055051335.1 type II secretion system protein M -
  INP70_RS00855 - 178430..179188 (+) 759 WP_193836542.1 type II secretion system protein N -
  INP70_RS00860 cysQ 179240..180067 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  INP70_RS00865 nudE 180090..180638 (-) 549 WP_033928929.1 ADP compounds hydrolase NudE -
  INP70_RS00870 nfuA 180777..181364 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  INP70_RS19360 comF 181452..182312 (-) 861 WP_322621731.1 ComF family protein Machinery gene
  INP70_RS00885 bioH 182248..183009 (+) 762 WP_193836626.1 pimeloyl-ACP methyl ester esterase BioH -
  INP70_RS00890 - 183253..183723 (+) 471 WP_000961393.1 hypothetical protein -
  INP70_RS00895 - 183818..186139 (-) 2322 WP_193836544.1 Tex family protein -
  INP70_RS00900 greB 186384..186866 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32754.97 Da        Isoelectric Point: 8.2575

>NTDB_id=495545 INP70_RS19360 WP_322621731.1 181452..182312(-) (comF) [Vibrio cholerae strain VC_hf7]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSIFIFIRSANWQDEMSYPDFWLAMLTNWLRKTTAPLLIPECYLCRLALDKNSP
FGICIACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLAPQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=495545 INP70_RS19360 WP_322621731.1 181452..182312(-) (comF) [Vibrio cholerae strain VC_hf7]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTTCATCTTCATCAGATCTGCCAATTGGCAAGATGAGATGAGTTACCCTGATTTTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCATTGCTCATTCCTGAGTGCTATCTTTGTCGACTCGCGCTCGATAAAAACTCGCCA
TTTGGGATCTGCATCGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCCCCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

95.105

100

0.951
  comF Vibrio campbellii strain DS40M4

45.378

83.217

0.378