Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IMI45_RS14645 Genome accession   NZ_CP063414
Coordinates   2865441..2867798 (-) Length   785 a.a.
NCBI ID   WP_256832950.1    Uniprot ID   A0AB38QVQ1
Organism   Parageobacillus thermoglucosidasius strain 23.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2860441..2872798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMI45_RS14625 (IMI45_14435) - 2861788..2861973 (-) 186 WP_061577858.1 hypothetical protein -
  IMI45_RS14630 (IMI45_14440) dtd 2862072..2862530 (-) 459 WP_003248937.1 D-aminoacyl-tRNA deacylase -
  IMI45_RS14635 (IMI45_14445) - 2862545..2864740 (-) 2196 WP_003248936.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IMI45_RS14640 (IMI45_14450) - 2864929..2865441 (-) 513 WP_003248934.1 adenine phosphoribosyltransferase -
  IMI45_RS14645 (IMI45_14455) recJ 2865441..2867798 (-) 2358 WP_256832950.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IMI45_RS14650 (IMI45_14460) secDF 2867927..2870179 (-) 2253 WP_256832951.1 protein translocase subunit SecDF -
  IMI45_RS14655 (IMI45_14465) - 2870361..2870657 (-) 297 WP_003248931.1 post-transcriptional regulator -
  IMI45_RS14660 (IMI45_14470) spoVB 2870775..2872337 (+) 1563 WP_003248930.1 stage V sporulation protein B -
  IMI45_RS14665 (IMI45_14475) - 2872407..2872781 (+) 375 WP_003248929.1 TIGR04086 family membrane protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87960.37 Da        Isoelectric Point: 5.4135

>NTDB_id=495482 IMI45_RS14645 WP_256832950.1 2865441..2867798(-) (recJ) [Parageobacillus thermoglucosidasius strain 23.6]
MLIAKTRWDVKRPDENIVKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYPLKQPFHDPFLLDGMERAVARIQRAIQDG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPTLPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGEVPRYLLDVAAIGTIADLVSLTGENRVL
VAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEADPAVRLLMTEDEEEAKRLAKEMDDLNRE
RQQLVAEIAEEAAQIIQEQFPPSENKVLVVAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDMF
SSLSTCRDILLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVAEQLEKFAPFGV
GNAKPLFLMENVSVETMRRVGADQSHLKAVFAQNGAAIDSVGFGFGYLRDEIAPDAKVSVVGELVINEWNHLRKPQLMIY
DMAVHECQLFDIRGMRDVRPLIAALPPDKRMLIMFREDTADALGIGAYKEEIYYAASAEEASRLCLDGRYVVLLDMPPSL
KMMKMLLRSSLPARIYALFYQRETHFFRTLPTREHFKWFYAFLRKRGMFNLAKHGGELARARGWTEETVWFMAKVFLELE
FITQRDGIVSLVPQPAKRDLSESPTYRLKQAQYELESLFLYSTYEQLKRCLFEMKGLHTYEEANA

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=495482 IMI45_RS14645 WP_256832950.1 2865441..2867798(-) (recJ) [Parageobacillus thermoglucosidasius strain 23.6]
ATGTTAATCGCAAAAACACGTTGGGATGTAAAACGGCCCGACGAAAATATCGTAAAGCATTTAGTGGAACAATTGCGGAT
CGATCCGCTTATTGCCACCCTTCTTGTCCATCGCGGAGTCCGCACGGCAGAGGAGGCGAACGCGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAGCGGGCGGTCGCGCGGATTCAGCGGGCGATACAGGATGGG
GAGCATATTTTAGTATATGGCGATTATGATGCGGACGGCGTAAGCAGCACGACGGTAATGGTCAGTGCGCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAACCGCTTTACCGAAGGATATGGCCCGAATGAAAAAGCGTTTCGCTGGGCAA
AGGATCAGGGATTTTCCTTGATTATTACGGTTGATAATGGCATTGCCGCGGTGAAGGAAGTGGCGCTTGCCAACGAGCTC
GGGATGGATGTCATTATTACCGACCATCACGAAGTGGGGCCGACGCTGCCGGAAGCGTATGAAATCATTCATCCGAAAAA
GCCTGGAAGTACATATCCGTTTCGAGAATTAGCCGGGGTTGGAGTGGCGTTTAAAGTTGCGCATGCGCTGCTCGGAGAGG
TGCCGCGCTATTTATTGGATGTCGCCGCAATCGGAACGATCGCCGATCTCGTTTCCCTTACCGGCGAAAATCGCGTATTG
GTGGCGCAAGGGCTTGAGCAGTTGCGAAAGACAAAACGTATAGGATTGCGCGCATTGTGTACACAATGTGGGATAGACGC
AGAAAAAATTGACGAGCAAACGGTGGGATTTATCATTGCGCCGCGGATGAATGCGGCCGGGCGATTGGGGGAAGCCGATC
CCGCTGTAAGATTGCTGATGACGGAGGATGAAGAAGAAGCAAAAAGGCTTGCGAAAGAAATGGATGATTTAAACCGGGAA
CGGCAGCAGCTTGTCGCGGAAATCGCGGAAGAAGCGGCACAAATCATACAGGAACAATTTCCGCCATCCGAGAATAAAGT
GCTGGTGGTGGCCAAAGAAGGATGGAATCCCGGAGTCATTGGTATTGTTGCATCCCGGCTGGTCGAACAGTTTTATCGCC
CGACGATCGTGCTAAGCATTGATGCGGAAAAAGGAATTGCGAAAGGTTCGGCGCGAAGCATTCACGGGTTTGATATGTTT
TCAAGCTTGTCGACGTGCCGCGATATTTTGCTGCATTTTGGCGGCCATCCGATGGCAGCGGGAATGACGCTGTCTCTTGA
AGATGTTGGCGAATTGCGCCGACGTCTTAACGCGCTTGCCGACGATATGCTGACAGACGATGATTTTACGCCAATAACAT
CGATTGACGCGGTTTGTTCCGTATCTGATTTAACCATGGCGGTGGCGGAGCAGCTGGAAAAATTCGCTCCATTTGGTGTC
GGTAATGCCAAACCTCTTTTTTTAATGGAAAATGTGTCAGTGGAAACGATGCGCCGCGTCGGTGCCGATCAATCGCATTT
AAAGGCCGTTTTTGCGCAAAATGGCGCTGCAATTGATAGCGTTGGCTTCGGCTTCGGATATTTGCGCGATGAAATCGCTC
CGGATGCGAAAGTGTCGGTTGTCGGCGAGCTTGTTATTAATGAGTGGAATCATCTTCGCAAGCCGCAGCTGATGATTTAT
GATATGGCGGTGCATGAATGCCAGCTGTTTGATATTCGCGGTATGCGCGATGTAAGGCCGCTGATTGCAGCGCTTCCGCC
AGATAAGCGGATGCTCATTATGTTTCGCGAAGATACGGCGGATGCGTTAGGAATCGGAGCATATAAAGAAGAGATTTATT
ATGCCGCCTCAGCGGAAGAAGCATCGCGGCTTTGTTTAGATGGACGCTATGTGGTGCTGTTGGATATGCCTCCGTCTTTG
AAAATGATGAAAATGTTATTACGTTCTAGTTTACCTGCACGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CCGCACGTTGCCGACGCGTGAACATTTTAAGTGGTTTTACGCGTTTTTGCGGAAGCGGGGCATGTTTAATTTGGCGAAAC
ACGGCGGAGAGTTGGCACGTGCGCGTGGCTGGACGGAAGAAACCGTCTGGTTTATGGCGAAAGTGTTTCTTGAACTGGAA
TTTATAACGCAACGGGATGGCATCGTATCGCTTGTTCCTCAGCCGGCTAAGCGAGATTTAAGCGAATCGCCGACTTATCG
CTTGAAACAAGCTCAGTATGAGCTGGAAAGTCTTTTTTTATATTCCACATATGAACAATTAAAGCGGTGTCTTTTTGAAA
TGAAAGGTTTGCACACATATGAGGAGGCAAATGCATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(305-439)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.393

98.599

0.536