Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM09_RS24805 Genome accession   NZ_CP074911
Coordinates   4894451..4894918 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 08_3418     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4889451..4899918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM09_RS24760 (KIM09_24495) rplP 4889561..4889971 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM09_RS24765 (KIM09_24500) rpsC 4889984..4890685 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM09_RS24770 (KIM09_24505) rplV 4890703..4891035 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM09_RS24775 (KIM09_24510) rpsS 4891050..4891328 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM09_RS24780 (KIM09_24515) rplB 4891345..4892166 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM09_RS24785 (KIM09_24520) rplW 4892184..4892486 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM09_RS24790 (KIM09_24525) rplD 4892483..4893088 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM09_RS24795 (KIM09_24530) rplC 4893099..4893728 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM09_RS24800 (KIM09_24535) rpsJ 4893761..4894072 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM09_RS24805 (KIM09_24540) pilD 4894451..4894918 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM09_RS24810 (KIM09_24545) bfr 4894915..4895391 (-) 477 WP_000675515.1 bacterioferritin -
  KIM09_RS24815 (KIM09_24550) bfd 4895464..4895658 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM09_RS24820 (KIM09_24555) tuf 4895841..4897025 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM09_RS24825 (KIM09_24560) fusA 4897096..4899210 (-) 2115 WP_000124700.1 elongation factor G -
  KIM09_RS24830 (KIM09_24565) rpsG 4899307..4899777 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=495238 KIM09_RS24805 WP_000339836.1 4894451..4894918(+) (pilD) [Escherichia coli strain 08_3418]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=495238 KIM09_RS24805 WP_000339836.1 4894451..4894918(+) (pilD) [Escherichia coli strain 08_3418]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361