Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KIM10_RS01455 Genome accession   NZ_CP074909
Coordinates   319648..320412 (-) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli strain 08_3449     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 314648..325412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM10_RS01445 (KIM10_01440) nikR 318438..318839 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  KIM10_RS01450 (KIM10_01445) nikE 318845..319651 (-) 807 WP_000173630.1 nickel import ATP-binding protein NikE -
  KIM10_RS01455 (KIM10_01450) amiE 319648..320412 (-) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  KIM10_RS01460 (KIM10_01455) nikC 320412..321245 (-) 834 WP_106913233.1 nickel ABC transporter permease subunit NikC -
  KIM10_RS01465 (KIM10_01460) nikB 321242..322186 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  KIM10_RS01470 (KIM10_01465) nikA 322186..323760 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  KIM10_RS01475 (KIM10_01470) acpT 323871..324458 (-) 588 WP_000285771.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=495102 KIM10_RS01455 WP_001136229.1 319648..320412(-) (amiE) [Escherichia coli strain 08_3449]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=495102 KIM10_RS01455 WP_001136229.1 319648..320412(-) (amiE) [Escherichia coli strain 08_3449]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398