Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IPU21_RS06355 Genome accession   NZ_CP063368
Coordinates   1338734..1341133 (+) Length   799 a.a.
NCBI ID   WP_212575459.1    Uniprot ID   A0AAQ0IH78
Organism   Staphylococcus delphini strain 245-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333734..1346133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS06325 (IPU21_06345) - 1333907..1334092 (+) 186 WP_096541591.1 CsbD family protein -
  IPU21_RS06330 (IPU21_06350) - 1334129..1334290 (+) 162 WP_179295255.1 hypothetical protein -
  IPU21_RS06335 (IPU21_06355) - 1334557..1335570 (-) 1014 WP_096541589.1 LLM class flavin-dependent oxidoreductase -
  IPU21_RS06340 (IPU21_06360) - 1335784..1336929 (+) 1146 WP_212575489.1 cysteine desulfurase family protein -
  IPU21_RS06345 (IPU21_06365) mnmA 1336962..1338041 (+) 1080 WP_420907859.1 tRNA 2-thiouridine(34) synthase MnmA -
  IPU21_RS06350 (IPU21_06370) - 1338057..1338731 (+) 675 WP_096541587.1 tetratricopeptide repeat protein -
  IPU21_RS06355 (IPU21_06375) recD2 1338734..1341133 (+) 2400 WP_212575459.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IPU21_RS06360 (IPU21_06380) alaS 1341378..1344011 (+) 2634 WP_212575460.1 alanine--tRNA ligase -
  IPU21_RS06365 (IPU21_06385) - 1344071..1344343 (+) 273 WP_014613743.1 IreB family regulatory phosphoprotein -
  IPU21_RS06370 (IPU21_06390) ruvX 1344336..1344764 (+) 429 WP_096541581.1 Holliday junction resolvase RuvX -
  IPU21_RS06375 (IPU21_06395) - 1344778..1345110 (+) 333 WP_212575461.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90297.65 Da        Isoelectric Point: 4.5990

>NTDB_id=494804 IPU21_RS06355 WP_212575459.1 1338734..1341133(+) (recD2) [Staphylococcus delphini strain 245-1]
MENPTLFDHTFIKGTVEMILFHNADNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDETYTFKGQVVQHARYGQQLKAE
TFQKEIPHTKEAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIERVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEETCIKQG
HTYLPQEALINETIQLLSQAKASSIDYDTMTQILAELVEEKRLVNQDEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIRHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLTQYFNPEDSEDEVDTDTDSAALILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=494804 IPU21_RS06355 WP_212575459.1 1338734..1341133(+) (recD2) [Staphylococcus delphini strain 245-1]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAAATGATTTTGTTTCATAATGCGGACAACCA
TTATACAGTGCTTAAAGTGGAAATTGAAGAAACAAATGGCGACTTTGATGATATGGCAACAGTGGTTGGATACTTTCCGA
ATATGGTAGAAGATGAGACGTACACTTTTAAAGGTCAAGTCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGAGGCCGTTATTGCGTATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACGGCAGAATCCATTGTCAATACGTTAGGTGAAAATGCGATTCATGACATTTTGAAAGACGAATCTGTCATTGAAC
GGGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTGGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACGTTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCTGACCAACTGGCCCAACAGC
TCGGTATTCATCCTGAGCATCCCGATCGTTTGAAAGCCGGATTACTTTATTTAGTTGAAGAGACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAAGCCAAAGCATCAAGTATCGACTA
TGACACCATGACGCAAATTTTGGCTGAATTGGTTGAAGAAAAGCGTCTAGTCAATCAAGATGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGCGAACATTTAACAACATTTGAT
GCGTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTGCATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCTATCCGACATAAAGTTATGCTCCTCACGGGTGGACCAGGTACAGGAAAGACAACTGTCATTAAAGGGATTG
TCCAGTTATACGCAGAAATTCATGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACTGGAAGAGCGTCTAAACGTTTACATGAAGCAACAGGGTTAGAAGCAATGACGATTCACCGCTTAATAGG
GTGGAATCAAGATACGAAACCACAAGACAAGTTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAGATGTCTA
TGGTGGACACTTGGCTATTCCATCAATTTATGGATGCAGTGCCTATTGATGCACAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTCCCATCAGTTGGCCCCGGACAAGTTTTTAAAGATCTCATTGATGCGAATGTATTACCGCGCATTAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGCATGAAACTCGGTGAAAAAGTCGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTTGTAGAAAAAGTGGTCAACAATGCT
GTGCAAAAAGGCTATACGATGGCAGATATTCAAGTGCTCGCACCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTTAA
CCAAATTTTACAAGGCATTTTGAATCCATTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTCCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCGAACGACAATGTGTTTAATGGCGATATTGGTGTCATTGTCGGAATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCGTGGTCGTCGATTATGATGGGAATGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACCCATGCCTATTGTACTTCGATTCATAAAGCACAAGGTTCAGAGTTTCCGATCGTTATTATGC
CCATTGTTAAGCAATATTTTAGAATGTTGCAAAAGCCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTAGGTGATGCGGATGCTTTTAATATCGGGTTAGCGACTGCAGGTCAAACGCGGTTAACGCAATTACAAACGTTCTT
AACGCAATATTTTAATCCGGAAGATAGTGAGGATGAAGTAGATACTGATACGGATTCTGCTGCGCTTATTTTAACTGAAG
CGACTATGTTTAAAATTCACCCGATGATTAATATGGGTGAAGTCACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.937

99.75

0.498