Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   INQ56_RS07980 Genome accession   NZ_CP063360
Coordinates   1569201..1569980 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564201..1574980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS07960 (INQ56_07960) trmFO 1564905..1566209 (+) 1305 WP_159159620.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  INQ56_RS07965 (INQ56_07965) xerC 1566272..1567189 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  INQ56_RS07970 (INQ56_07970) hslV 1567204..1567749 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  INQ56_RS07975 (INQ56_07975) hslU 1567766..1569166 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  INQ56_RS07980 (INQ56_07980) codY 1569201..1569980 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  INQ56_RS07985 (INQ56_07985) flgB 1570271..1570660 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  INQ56_RS07990 (INQ56_07990) flgC 1570660..1571112 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  INQ56_RS07995 (INQ56_07995) fliE 1571124..1571441 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  INQ56_RS08000 (INQ56_08000) fliF 1571492..1573084 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  INQ56_RS08005 (INQ56_08005) fliG 1573096..1574112 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  INQ56_RS08010 (INQ56_08010) fliH 1574105..1574869 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=494691 INQ56_RS07980 WP_041108981.1 1569201..1569980(+) (codY) [Bacillus altitudinis strain BIM B-263]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=494691 INQ56_RS07980 WP_041108981.1 1569201..1569980(+) (codY) [Bacillus altitudinis strain BIM B-263]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTGATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467