Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   IOO21_RS06395 Genome accession   NZ_CP063357
Coordinates   1246729..1247244 (-) Length   171 a.a.
NCBI ID   WP_002869328.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R4B202     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241729..1252244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS06380 - 1241828..1243558 (-) 1731 WP_194250855.1 flagellin A -
  IOO21_RS06385 - 1243641..1245467 (-) 1827 WP_002869330.1 motility associated factor glycosyltransferase family protein -
  IOO21_RS06390 - 1245479..1246729 (-) 1251 WP_002869329.1 DUF2920 family protein -
  IOO21_RS06395 ctsG 1246729..1247244 (-) 516 WP_002869328.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IOO21_RS06400 tsaD 1247245..1248252 (-) 1008 WP_002869327.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  IOO21_RS06405 - 1248249..1249643 (-) 1395 WP_002869326.1 M99 family carboxypeptidase catalytic domain-containing protein -
  IOO21_RS06410 dxr 1249645..1250715 (-) 1071 WP_002869325.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  IOO21_RS06415 cdsA 1250712..1251437 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  IOO21_RS06420 - 1251446..1251784 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18747.67 Da        Isoelectric Point: 8.4866

>NTDB_id=494621 IOO21_RS06395 WP_002869328.1 1246729..1247244(-) (ctsG) [Campylobacter jejuni strain R4B202]
MRKAFTILELVFVIVILGILAAVALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLNSIKTMSNVSGIENIDLSN
FNGTKEVNFRVGDDKKCLKLVFINKVDFILMGISSNEASKNAIINAANQSHEDLENVNFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=494621 IOO21_RS06395 WP_002869328.1 1246729..1247244(-) (ctsG) [Campylobacter jejuni strain R4B202]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCTGCTGTTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAACTCTATAAAAACAATGAGTAATGTAAGTGGGATTGAAAATATCGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAAAATGCTTAAAACTTGTTTTTATAAATAAAGTAGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAAACTTTACAAGCTCTTCAAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

100

100

1