Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AWH56_RS01025 Genome accession   NZ_CP063356
Coordinates   209213..211561 (-) Length   782 a.a.
NCBI ID   WP_071319489.1    Uniprot ID   A0A1S2KU05
Organism   Anaerobacillus isosaccharinicus strain NB2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204213..216561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWH56_RS01005 (AWH56_001005) - 205397..205609 (-) 213 WP_071319485.1 hypothetical protein -
  AWH56_RS01010 (AWH56_001010) dtd 205756..206196 (-) 441 WP_071319486.1 D-aminoacyl-tRNA deacylase -
  AWH56_RS01015 (AWH56_001015) - 206211..208388 (-) 2178 WP_420827564.1 RelA/SpoT family protein -
  AWH56_RS01020 (AWH56_001020) - 208619..209134 (-) 516 WP_071319488.1 adenine phosphoribosyltransferase -
  AWH56_RS01025 (AWH56_001025) recJ 209213..211561 (-) 2349 WP_071319489.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AWH56_RS01030 (AWH56_001030) - 211617..211940 (-) 324 WP_071319490.1 LapA family protein -
  AWH56_RS01035 (AWH56_001035) - 212050..212946 (-) 897 WP_071319491.1 cation diffusion facilitator family transporter -
  AWH56_RS01040 (AWH56_001040) secF 213133..214065 (-) 933 WP_169824324.1 protein translocase subunit SecF -
  AWH56_RS01045 (AWH56_001045) secD 214055..215344 (-) 1290 WP_169824325.1 protein translocase subunit SecD -
  AWH56_RS01050 (AWH56_001050) - 215556..215843 (-) 288 WP_071319492.1 post-transcriptional regulator -
  AWH56_RS01055 (AWH56_001055) - 215862..216347 (-) 486 WP_071319493.1 COG2426 family protein -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 88282.60 Da        Isoelectric Point: 5.7345

>NTDB_id=494566 AWH56_RS01025 WP_071319489.1 209213..211561(-) (recJ) [Anaerobacillus isosaccharinicus strain NB2006]
MLRSKKRWKVEGRGHSLEQQFVTELKITPLVANLLLNRGISSVEEARNFLYIEKMNFHDPFMMKGMRIATERIHQAIREK
EKILIFGDYDADGVSSTAVMVHTLKRLKAEFDFYIPNRFTEGYGPNEPALRKAKDTGYSLVVTVDTGISAVHEANVAKEI
GLDFIVTDHHEPPPVLPDAYAIVNPKQEDCMYPFKGLAGVGVAFKLAHALLGQVPEDLLDIVVIGTVADLVPLVDENRLI
TKKGIKALENTNRPGLQALKKITGMIDKELNADHVGFGIGPRINAAGRLDSATPAVELLICEDKITAERLATDIDELNKV
RQGIVNEITEEAVEIVENLYTSLDDHKVLIVAKEGWNAGVIGIVASRLVERYYRPTIVLTIDKEKGLAKGSARSIEGFDM
FKNLSECRDILPHFGGHPMAAGLTMKLADLEELRSRLNVIASEVLTASDYIPITKIDIGVSLKDVTLPVIEEMSLLAPFG
VSNPTPKIMVDQVNLSQMKRIGSEENHLKMLLEQNGNTVDCVGFHLGYLFEEISMSAQISAVGTLSINEWNGHCKPQLML
EDVAVNDWQLFDCRGNGSFKKYSQLPAEKVVCIYFDESTLDALKIESKYQLVHVPYGIEAPELDFSEKYLFLLDLPFEKS
QLEIVLSKCQKPERIYPIFHHNENHFFTTIPSRENFKWFYAFLTKQQTFDLNKYGAQLAKHKGWSTDTIDFMVKVFFDLE
FVTIKNGLISLSTNIEKKDLNHSKTYKRKQEQAKLENDLYYSSYNELKQWFEQLFLAVQNVE

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=494566 AWH56_RS01025 WP_071319489.1 209213..211561(-) (recJ) [Anaerobacillus isosaccharinicus strain NB2006]
ATGTTAAGGTCGAAAAAAAGATGGAAAGTAGAAGGTCGAGGCCATTCCTTAGAACAACAGTTTGTCACTGAATTAAAAAT
AACACCACTAGTGGCAAATCTACTATTAAATAGAGGAATTTCCTCAGTAGAGGAAGCTCGTAATTTTTTATACATTGAAA
AAATGAACTTTCACGATCCCTTCATGATGAAGGGGATGAGAATAGCAACAGAGCGAATTCATCAGGCGATCCGAGAAAAA
GAAAAGATCTTAATTTTTGGTGATTATGATGCCGATGGCGTTAGTAGTACTGCTGTAATGGTACATACACTAAAGCGTTT
AAAAGCTGAATTTGATTTTTATATTCCTAATCGTTTTACAGAAGGATATGGCCCAAATGAGCCTGCCTTAAGAAAAGCAA
AGGATACTGGGTATTCATTGGTTGTAACCGTTGATACTGGTATTTCCGCTGTTCATGAAGCGAATGTAGCAAAAGAGATC
GGTCTAGATTTTATTGTGACGGATCATCATGAACCGCCACCAGTATTACCAGATGCTTATGCCATTGTTAATCCAAAACA
AGAGGATTGTATGTACCCGTTTAAAGGGTTAGCAGGAGTCGGTGTAGCCTTCAAACTAGCTCATGCATTGCTTGGGCAAG
TTCCGGAAGACTTATTAGATATAGTAGTAATCGGTACGGTGGCAGACTTAGTTCCGCTAGTAGACGAAAACCGTCTTATT
ACAAAAAAAGGAATAAAGGCATTAGAAAATACAAATCGTCCTGGACTACAAGCGTTGAAGAAAATAACTGGAATGATCGA
TAAGGAATTGAACGCCGACCATGTTGGTTTTGGAATTGGTCCAAGAATAAATGCTGCAGGCAGACTTGACTCAGCTACCC
CAGCTGTAGAGCTGTTAATCTGTGAAGATAAAATCACAGCAGAACGGTTAGCAACAGACATTGATGAACTTAATAAAGTT
AGGCAAGGTATCGTCAACGAAATTACTGAAGAAGCAGTTGAAATTGTCGAAAACTTATATACTTCTTTAGATGATCACAA
AGTTTTAATTGTTGCTAAAGAAGGTTGGAATGCTGGGGTTATTGGAATTGTTGCCTCAAGATTAGTAGAGCGGTATTATC
GCCCAACGATTGTATTGACTATTGATAAAGAAAAAGGCTTAGCAAAGGGGTCTGCTAGAAGTATTGAAGGCTTTGATATG
TTCAAAAACTTATCTGAATGTCGCGATATCTTACCCCATTTTGGTGGCCATCCAATGGCTGCTGGCTTAACGATGAAATT
AGCTGATCTAGAAGAATTAAGAAGTCGCTTAAATGTTATTGCTAGTGAAGTTTTAACCGCATCGGATTACATTCCAATTA
CAAAAATTGATATTGGTGTTTCATTAAAGGATGTAACCCTACCGGTAATTGAGGAAATGAGCTTGCTAGCTCCTTTTGGA
GTAAGTAACCCTACTCCAAAAATAATGGTAGACCAGGTAAACTTGTCACAAATGAAGCGAATTGGCAGTGAAGAGAATCA
TTTAAAAATGCTACTAGAGCAAAATGGGAACACTGTAGACTGTGTAGGGTTTCATCTTGGGTATCTTTTTGAAGAAATTT
CTATGTCAGCACAAATTTCAGCCGTTGGTACGCTTTCGATTAACGAATGGAATGGTCATTGTAAACCACAGCTCATGTTA
GAAGATGTTGCAGTTAACGATTGGCAATTGTTTGACTGTCGCGGAAATGGGAGCTTTAAGAAATATAGTCAATTACCCGC
AGAAAAGGTCGTTTGTATTTATTTCGATGAGTCAACATTAGATGCCTTGAAGATCGAAAGCAAATATCAATTAGTTCATG
TTCCTTATGGAATAGAGGCACCTGAGCTCGATTTTTCTGAGAAATATTTATTTTTATTAGACCTGCCTTTTGAAAAAAGT
CAGCTCGAAATAGTATTATCAAAATGTCAAAAACCAGAAAGAATATATCCAATCTTTCACCATAATGAAAATCACTTTTT
CACAACAATCCCATCTAGGGAAAACTTCAAATGGTTTTATGCTTTTTTAACAAAGCAACAAACATTTGACTTAAATAAAT
ATGGTGCCCAGTTAGCAAAACATAAAGGGTGGTCAACTGACACAATTGATTTTATGGTAAAGGTGTTTTTTGATTTAGAA
TTTGTTACAATTAAAAATGGACTTATATCCCTTTCTACAAATATCGAGAAAAAAGATCTCAATCATTCAAAAACATACAA
ACGAAAACAAGAACAGGCAAAATTAGAAAACGATTTATATTATTCTTCTTACAATGAACTAAAACAATGGTTTGAACAAC
TTTTTCTAGCCGTTCAAAACGTAGAATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-771)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2KU05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.282

99.361

0.529