Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM19_RS25955 Genome accession   NZ_CP074872
Coordinates   5066599..5067066 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 2011C_4247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5061599..5072066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM19_RS25910 (KIM19_25625) rplP 5061709..5062119 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM19_RS25915 (KIM19_25630) rpsC 5062132..5062833 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM19_RS25920 (KIM19_25635) rplV 5062851..5063183 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM19_RS25925 (KIM19_25640) rpsS 5063198..5063476 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM19_RS25930 (KIM19_25645) rplB 5063493..5064314 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM19_RS25935 (KIM19_25650) rplW 5064332..5064634 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM19_RS25940 (KIM19_25655) rplD 5064631..5065236 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM19_RS25945 (KIM19_25660) rplC 5065247..5065876 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM19_RS25950 (KIM19_25665) rpsJ 5065909..5066220 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM19_RS25955 (KIM19_25670) pilD 5066599..5067066 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM19_RS25960 (KIM19_25675) bfr 5067063..5067539 (-) 477 WP_000675515.1 bacterioferritin -
  KIM19_RS25965 (KIM19_25680) bfd 5067612..5067806 (-) 195 WP_032346861.1 bacterioferritin-associated ferredoxin -
  KIM19_RS25970 (KIM19_25685) tuf 5067989..5069173 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM19_RS25975 (KIM19_25690) fusA 5069244..5071358 (-) 2115 WP_000124700.1 elongation factor G -
  KIM19_RS25980 (KIM19_25695) rpsG 5071455..5071925 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=494359 KIM19_RS25955 WP_000339836.1 5066599..5067066(+) (pilD) [Escherichia coli strain 2011C_4247]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=494359 KIM19_RS25955 WP_000339836.1 5066599..5067066(+) (pilD) [Escherichia coli strain 2011C_4247]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361