Detailed information NTG0049431

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SSAL_RS09135
• Genome accession: NC_017594
• Coordinates: 1958902..1959840 (-)
• Length: 312 a.a.
• NCBI ID: WP_014633661.1
• Uniprot ID: -
• Organism: Streptococcus salivarius 57.I
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1957600..1958856	1958902..1959840	flank	46

Gene organization within MGE regions

Location: 1957600..1959840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSAL_RS09130 (Ssal_01997)	-	1957600..1958849 (+)	1250	Protein_1789	ISL3 family transposase	-
SSAL_RS09135 (Ssal_01999)	amiF	1958902..1959840 (-)	939	WP_014633661.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 35273.04 Da
• Isoelectric Point: 6.5085

>NTDB_id=49431 SSAL_RS09135 WP_014633661.1 1958902..1959840(-) (amiF) [Streptococcus salivarius 57.I]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSILKLYDIDSGTVTFAGNDISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELINLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGEKRQMYEIRTGHFVYATEAEAKNYKEEANVN

Nucleotide

• Length: 939 bp

>NTDB_id=49431 SSAL_RS09135 WP_014633661.1 1958902..1959840(-) (amiF) [Streptococcus salivarius 57.I]
ATGACACAAGAACGTAAGAAGTTAGTAGAATTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAAGTTAA
GGCCATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTCGGCCTAGTTGGAGAATCTGGTTCAGGTAAAACGA
CCATTGGGCGTTCTATTCTAAAGCTTTATGATATTGATTCGGGTACTGTTACCTTTGCTGGTAATGATATATCAAGTTTA
AAAGGGAAAGACCTTCATGATTTCCGTAAGACAGCTCAGATGATTTTTCAAGATCCTCAAGCTAGTCTTAATGGACGAAT
GAAGATTCGTGATATTATTGCTGAGGGGATTGATATTCATAAATTGGCTAAATCCAAGGAAGAACGTGAAGCCAAGGTTA
AAGAACTTATTAATTTGGTGGGATTAAATGAAGATCACTTATCAAGATATCCTCATGAATTTTCTGGTGGTCAGCGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTCAATCCTCATTTTATTGTAGCAGACGAACCTATCTCTGCTTTAGATGTTTC
TATTCAAGCACAAGTAGTTAATTTGATGCAAAAGTTACAACACGAACAGGGGTTAACTTATTTGTTTATTGCACATGACT
TGTCAATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTCCTTGAGGTAGGACCAGCAGATGAG
ATTTACCATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCTGCCATTCCAGAACCAGACCCAGAAAGAGAGCGGAA
ACGTCAACATTTGATTTATGATTCCTCTATTGAAAATGATGGGGAAAAGAGACAAATGTATGAAATCCGAACAGGACATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAATGTAAATTAG

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.426	97.756	0.532
amiF	Streptococcus thermophilus LMG 18311	54.098	97.756	0.529
amiF	Streptococcus salivarius strain HSISS4	53.77	97.756	0.526