Detailed information NTG0494293

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: JNUCC6_RS08590
• Genome accession: NZ_CP063302
• Coordinates: 1719284..1721755 (-)
• Length: 823 a.a.
• NCBI ID: WP_193740534.1
• Uniprot ID: A0A7M2QYP1
• Organism: Viridibacillus sp. JNUCC-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1714284..1726755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNUCC6_RS08565 (JNUCC6_08565)	-	1714907..1715200 (-)	294	WP_038187247.1	DUF1292 domain-containing protein	-
JNUCC6_RS08570 (JNUCC6_08570)	-	1715229..1715525 (-)	297	WP_193740532.1	DUF1292 domain-containing protein	-
JNUCC6_RS08575 (JNUCC6_08575)	ruvX	1715538..1715957 (-)	420	WP_193741042.1	Holliday junction resolvase RuvX	-
JNUCC6_RS08580 (JNUCC6_08580)	-	1715960..1716226 (-)	267	WP_038187270.1	IreB family regulatory phosphoprotein	-
JNUCC6_RS08585 (JNUCC6_08585)	alaS	1716306..1718933 (-)	2628	WP_193740533.1	alanine--tRNA ligase	-
JNUCC6_RS08590 (JNUCC6_08590)	recD2	1719284..1721755 (-)	2472	WP_193740534.1	ATP-dependent RecD-like DNA helicase	Machinery gene
JNUCC6_RS08595 (JNUCC6_08595)	-	1721772..1722431 (-)	660	WP_193740535.1	lipopolysaccharide assembly protein LapB	-
JNUCC6_RS08600 (JNUCC6_08600)	mnmA	1722446..1723567 (-)	1122	WP_053416438.1	tRNA 2-thiouridine(34) synthase MnmA	-
JNUCC6_RS08605 (JNUCC6_08605)	-	1723587..1724729 (-)	1143	WP_193740536.1	cysteine desulfurase family protein	-
JNUCC6_RS08610 (JNUCC6_08610)	cymR	1724922..1725341 (-)	420	WP_193740537.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 823 a.a.
• Molecular weight: 91952.08 Da
• Isoelectric Point: 4.6735

>NTDB_id=494293 JNUCC6_RS08590 WP_193740534.1 1719284..1721755(-) (recD2) [Viridibacillus sp. JNUCC-6]
MTENVSLFQEEQLFIVGRPVVSIFHNPQNLFSIIKLKIQETNTTYQEKEIIVTGFFPSVVQETLYRFTGQLKQHPKYGIQ
FQANTFVKEIPGTEQGVVHYLSSDLFPGIGHKTAETIVKKLGKDAIKIIINNPDALDEIPRLTEDKKETLRSVLEQNLGL
DRIMIQLNDWGFGPQLAVRIYQMYENETIQLLTENPYRLIEEVEGVGFQRADELGAKLHITGDHPDRIKAAVLHLLNAGA
LSEGHVYMEAKDILPQAKSLLEMSQAYEIPFEAISKACIELREDSKICGEETRLYMPSLYFSEIGIASKITELVQKNAEQ
SAFPTSEIRKFIGDAEERFGVSYAETQVDAIEKAINSAVMILTGGPGTGKTTVVRGIVDVYAELHGLTLNPKDYIEKDEP
FPIVLVAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEETEKEVGGRLIIVDEMSMVDTWLAHQLLKSLNDDCQVIFV
GDQDQLPPVGPGQVLKDLLASKAIPTVELTDVYRQADGSSIIELAHQMKKGEMPQNMLAKTSDRSFIQAGSDQVADVIKQ
VVSSAVKKGFSIHDVQILAPMYRGPAGIDAINKMIQELVNPKKTEKSKEITFGDVTYRIGDKILQLVNQPNSNVFNGDMG
EVISIIKANETIEKQDLLVASYDGIEVTYQRGDLNQITLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRKNLLYTGITRA
KNFLILCGEIDVFKYGMLRTDDLQRNTTLAQRLQIEEVLEAVKDSVEPELAQVSETTNSTNVEPQEEQLSLESQSLNTDN
YLDIHPLIGMKGISPYDFLEEEI

Nucleotide

• Length: 2472 bp

>NTDB_id=494293 JNUCC6_RS08590 WP_193740534.1 1719284..1721755(-) (recD2) [Viridibacillus sp. JNUCC-6]
TTGACTGAAAATGTATCATTGTTTCAAGAAGAACAGCTATTTATAGTCGGTCGGCCTGTCGTCTCTATCTTCCATAATCC
TCAGAATTTATTTTCCATCATTAAGTTAAAAATCCAAGAAACGAATACGACATATCAAGAAAAAGAAATTATCGTGACAG
GCTTTTTTCCATCTGTCGTTCAAGAAACGTTGTATCGTTTTACTGGACAATTGAAACAGCATCCTAAATACGGCATACAA
TTTCAAGCTAATACTTTTGTTAAAGAGATTCCTGGTACTGAACAAGGTGTCGTACATTACTTGTCGAGTGATTTATTCCC
AGGGATAGGTCATAAAACGGCTGAGACAATCGTTAAAAAGCTAGGGAAAGACGCCATTAAAATTATTATTAATAATCCGG
ATGCACTTGATGAAATTCCAAGGCTTACAGAAGATAAAAAAGAGACATTACGCTCCGTACTAGAGCAAAATCTAGGATTG
GATCGTATTATGATCCAATTAAATGATTGGGGCTTTGGCCCACAACTAGCAGTGCGTATATACCAAATGTATGAAAATGA
AACAATTCAACTTTTAACAGAGAATCCTTACAGACTTATTGAAGAAGTTGAAGGTGTAGGTTTTCAACGTGCCGATGAAT
TAGGAGCTAAACTACATATTACAGGGGACCATCCAGATCGTATTAAAGCTGCTGTGTTACACCTATTAAATGCAGGTGCT
CTGTCAGAGGGGCATGTATATATGGAAGCGAAGGATATTCTGCCACAAGCGAAAAGCCTACTTGAAATGAGTCAGGCATA
TGAAATTCCTTTTGAGGCGATTTCAAAAGCCTGTATCGAGCTTCGCGAGGACAGTAAAATTTGTGGTGAAGAAACACGCC
TCTATATGCCGTCTTTGTATTTTTCTGAGATTGGTATTGCTTCTAAAATTACAGAGTTAGTTCAAAAAAATGCTGAACAA
TCCGCGTTCCCTACATCTGAAATCCGAAAATTTATCGGTGATGCTGAGGAACGTTTTGGTGTTTCATATGCAGAAACGCA
AGTGGACGCCATTGAGAAGGCTATTAACTCAGCAGTTATGATTTTAACAGGTGGCCCTGGTACAGGGAAAACGACTGTAG
TTAGAGGGATTGTAGACGTTTATGCAGAGCTTCATGGCTTAACTTTAAATCCAAAAGACTATATTGAAAAAGACGAGCCT
TTTCCGATTGTATTAGTGGCGCCGACAGGAAGAGCAGCTAAGCGTCTTAGTGAATCAACTGAATTACCGGCGATGACTAT
TCACCGTTTGCTTGGCTTCACTGGACAAGAAAAGGAAGAGGAAACGGAGAAGGAAGTTGGAGGGAGGCTCATCATCGTCG
ACGAAATGTCGATGGTCGATACATGGCTCGCTCATCAGTTGTTGAAATCGTTAAATGACGATTGCCAAGTTATTTTTGTT
GGTGACCAAGATCAATTGCCGCCTGTAGGTCCTGGACAAGTGCTAAAAGATTTACTTGCTTCTAAAGCAATTCCAACTGT
TGAGTTAACTGATGTATATAGACAAGCAGATGGCTCATCAATTATTGAACTTGCCCATCAAATGAAAAAAGGCGAGATGC
CACAAAACATGCTTGCAAAAACATCCGATCGTTCTTTTATCCAAGCTGGCTCCGACCAAGTAGCTGATGTCATCAAACAA
GTCGTATCAAGTGCTGTTAAGAAAGGCTTCTCCATTCATGATGTGCAAATTTTAGCACCTATGTATAGAGGCCCTGCAGG
CATTGATGCTATTAATAAAATGATTCAGGAACTAGTTAATCCGAAGAAAACTGAAAAGAGTAAGGAAATAACATTTGGTG
ATGTGACGTATCGTATTGGTGATAAAATTTTACAGCTTGTCAATCAACCGAATAGCAATGTCTTTAACGGTGATATGGGG
GAAGTAATTAGTATAATCAAAGCGAATGAGACAATTGAGAAACAAGACTTACTTGTAGCTTCATATGATGGCATTGAAGT
AACATATCAACGCGGTGATTTGAATCAGATCACTCTTGCTTACTGTTGTTCAATTCATAAATCACAAGGTAGTGAATTCC
AAACAGTTATTATGCCAGTAGTACGTGGTTATTCTAAAATGTTGCGTAAAAACTTGTTGTATACAGGAATTACGAGGGCA
AAAAACTTCCTCATACTTTGTGGTGAAATTGATGTGTTTAAGTATGGTATGCTAAGAACGGATGATCTTCAAAGAAACAC
TACTTTAGCACAACGTCTTCAAATAGAAGAAGTTCTAGAGGCGGTTAAAGATTCTGTTGAGCCAGAATTGGCGCAAGTGT
CAGAAACAACTAATTCAACAAATGTCGAGCCACAAGAAGAGCAACTATCGTTGGAATCACAGTCCTTGAATACTGATAAT
TATTTAGATATTCATCCTTTAATCGGCATGAAAGGTATAAGTCCTTATGATTTTCTTGAAGAAGAGATTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (343-551)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-652)

3D structure

• AlphaFold DB: A0A7M2QYP1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.673	99.271	0.503